Os01g0895100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Membrane-associated 30 kDa protein, chloroplast precursor (M30).
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Os01g0895100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Membrane-associated 30 kDa protein, chloroplast precursor (M30).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.2 | 0.183 | 13.5 | -1.03 | 0.0903 | 0.941 | -0.0524 | -0.298 | -0.317 | 21.4 | 11.4 | 888 | -- | -- |
| 15.26 | 0.182 | 13.5 | -0.98 | 0.0919 | 0.938 | -0.105 | -- | -0.303 | 21.2 | 11.77 | 891 | -- | -- |
| 15.21 | 0.182 | 13.5 | -1.04 | 0.0914 | 0.937 | -- | -0.334 | -0.319 | 21.4 | 11.2 | 891 | -- | -- |
| 15.3 | 0.182 | 13.5 | -0.975 | 0.0894 | 0.938 | -- | -- | -0.302 | 21.5 | 11.98 | 888 | -- | -- |
| 15.54 | 0.184 | 13.5 | -1.05 | -- | 1.01 | -- | -0.349 | -0.329 | -- | 11.68 | 841 | -- | -- |
| 27.27 | 0.245 | 13.5 | -0.722 | 0.271 | -- | -0.0207 | -- | -0.153 | 22 | -- | -- | -- | -- |
| 27.27 | 0.245 | 13.5 | -0.721 | 0.271 | -- | -- | -- | -0.153 | 22 | -- | -- | -- | -- |
| 15.64 | 0.184 | 13.5 | -0.987 | -- | 1 | -- | -- | -0.311 | -- | 11.38 | 842 | -- | -- |
| 37.17 | 0.284 | 13.5 | -- | 0.158 | 0.511 | -- | -- | -0.137 | 22.3 | 13.85 | 761 | -- | -- |
| 31.69 | 0.263 | 13.5 | -0.718 | -- | -- | -- | -- | -0.153 | -- | -- | -- | -- | -- |
| 40.98 | 0.299 | 13.4 | -- | 0.269 | -- | -- | -- | -0.0727 | 21.8 | -- | -- | -- | -- |
| 37.03 | 0.283 | 13.5 | -- | -- | 0.525 | -- | -- | -0.148 | -- | 22.3 | 780 | -- | -- |
| 45.29 | 0.314 | 13.4 | -- | -- | -- | -- | -- | -0.0732 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.55 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 18 |
| 6 | 14.64 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 23 | 20 |
| 15 | 14.77 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 8 | 6 |
| 29 | 14.83 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 7 | 12 |
| 43 | 14.85 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 4 | 17 |
| 49 | 14.86 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 7 | 12 |
| 108 | 14.92 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 23 | NA |
| 168 | 14.99 | temperature | 10.0 | 1440 | > th | dose dependent | sin | 23 | NA |
| 278 | 15.09 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 279 | 15.09 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 295 | 15.10 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 352 | 15.15 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 8 | 3 |
| 394 | 15.18 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 5 | 23 |
| 437 | 15.22 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 7 | 13 |
| 562 | 15.32 | temperature | 30.0 | 720 | < th | dose dependent | sin | 1 | NA |
| 601 | 15.34 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 652 | 15.37 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 14 | 23 |
| 654 | 15.38 | temperature | 10.0 | 720 | > th | dose dependent | no | NA | NA |
| 708 | 15.42 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 773 | 15.45 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 920 | 15.54 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 2 |