BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0895100 Os01g0895100|AK058611
         (317 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G65260.1  | chr1:24236329-24240428 FORWARD LENGTH=331          411   e-115

>AT1G65260.1 | chr1:24236329-24240428 FORWARD LENGTH=331
          Length = 330

 Score =  411 bits (1057), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/294 (71%), Positives = 247/294 (84%), Gaps = 4/294 (1%)

Query: 27  LRTSFL-NGSVSLRLIQVRQSNVNRFKCNGIRS--NLLDRFSRVVKSYANAVLSSFEDPE 83
           LRTSF  N S +LR+  +R +  NR +CNG  +  NL +RFSRVVKSYANA++SSFEDPE
Sbjct: 38  LRTSFFGNSSGALRVNVLRLACDNRLRCNGHGATMNLFERFSRVVKSYANALISSFEDPE 97

Query: 84  KILDQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQASDDWYRRAQLALQKGDEDL 143
           KIL+Q V+EMN DLTKMRQATAQVLASQK+L+NKYKAA+Q+SDDWY+RAQLAL KGDEDL
Sbjct: 98  KILEQTVIEMNSDLTKMRQATAQVLASQKQLQNKYKAAQQSSDDWYKRAQLALAKGDEDL 157

Query: 144 AREALKRRKSYADNASSLKAQLDQQKGVVENLVSNTRVLESKIAEAKQKKDTLKARAQSA 203
           AREALKRRKS+ADNA++LK QLDQQKGVV+NLVSNTR+LESKI EAK KKDTL ARA++A
Sbjct: 158 AREALKRRKSFADNATALKTQLDQQKGVVDNLVSNTRLLESKIQEAKAKKDTLLARARTA 217

Query: 204 KTSTKVSEMLGNVNTSGALSAFEKMEEKVMAMESQAEALGQLATDDLEGKFALLETSSVD 263
           KT+TKV EM+G VNTSGALSAFEKMEEKVMAMES+A+AL Q+ TD+LEGKF +LETSSVD
Sbjct: 218 KTATKVQEMIGTVNTSGALSAFEKMEEKVMAMESEADALTQIGTDELEGKFQMLETSSVD 277

Query: 264 DDLAQMXXXXXXXXXXXXLPPGRTAVSNSGAARPFRDIEIENELNELRKKANEY 317
           DDLA +            LPPGR+ V+ S    PF+D EIENELNELR+KAN++
Sbjct: 278 DDLADLKKELSGSSKKGELPPGRSTVAAS-TRYPFKDSEIENELNELRRKANDF 330



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.310    0.124    0.319 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,744,190
Number of extensions: 160254
Number of successful extensions: 831
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 832
Number of HSP's successfully gapped: 2
Length of query: 317
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 218
Effective length of database: 8,392,385
Effective search space: 1829539930
Effective search space used: 1829539930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 112 (47.8 bits)