BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0895100 Os01g0895100|AK058611
         (317 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0895100  Similar to Membrane-associated 30 kDa protein,...   557   e-159

>Os01g0895100 Similar to Membrane-associated 30 kDa protein, chloroplast
           precursor (M30)
          Length = 317

 Score =  557 bits (1435), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 279/291 (95%), Positives = 279/291 (95%)

Query: 27  LRTSFLNGSVSLRLIQVRQSNVNRFKCNGIRSNLLDRFSRVVKSYANAVLSSFEDPEKIL 86
           LRTSFLNGSVSLRLIQVRQSNVNRFKCNGIRSNLLDRFSRVVKSYANAVLSSFEDPEKIL
Sbjct: 27  LRTSFLNGSVSLRLIQVRQSNVNRFKCNGIRSNLLDRFSRVVKSYANAVLSSFEDPEKIL 86

Query: 87  DQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQASDDWYRRAQLALQKGDEDLARE 146
           DQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQASDDWYRRAQLALQKGDEDLARE
Sbjct: 87  DQAVLEMNDDLTKMRQATAQVLASQKRLENKYKAAEQASDDWYRRAQLALQKGDEDLARE 146

Query: 147 ALKRRKSYADNASSLKAQLDQQKGVVENLVSNTRVLESKIAEAKQKKDTLKARAQSAKTS 206
           ALKRRKSYADNASSLKAQLDQQKGVVENLVSNTRVLESKIAEAKQKKDTLKARAQSAKTS
Sbjct: 147 ALKRRKSYADNASSLKAQLDQQKGVVENLVSNTRVLESKIAEAKQKKDTLKARAQSAKTS 206

Query: 207 TKVSEMLGNVNTSGALSAFEKMEEKVMAMESQAEALGQLATDDLEGKFALLETSSVDDDL 266
           TKVSEMLGNVNTSGALSAFEKMEEKVMAMESQAEALGQLATDDLEGKFALLETSSVDDDL
Sbjct: 207 TKVSEMLGNVNTSGALSAFEKMEEKVMAMESQAEALGQLATDDLEGKFALLETSSVDDDL 266

Query: 267 AQMXXXXXXXXXXXXLPPGRTAVSNSGAARPFRDIEIENELNELRKKANEY 317
           AQM            LPPGRTAVSNSGAARPFRDIEIENELNELRKKANEY
Sbjct: 267 AQMKKEISGSSSKGELPPGRTAVSNSGAARPFRDIEIENELNELRKKANEY 317



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.124    0.319 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,007,073
Number of extensions: 223142
Number of successful extensions: 1061
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1059
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 216
Effective length of database: 11,762,187
Effective search space: 2540632392
Effective search space used: 2540632392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 156 (64.7 bits)