Os01g0878800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 4,5-DOPA dioxygenase extradiol.
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Os01g0878800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 4,5-DOPA dioxygenase extradiol.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.16 | 0.358 | 11.7 | 0.265 | 0.18 | -0.0188 | 0.29 | -9.43 | 0.373 | 22.9 | 30.71 | 837 | -- | -- |
| 60.29 | 0.362 | 11.6 | 1.43 | 0.0973 | -1.06 | 0.0969 | -- | 0.352 | 22.5 | 31.25 | 2049 | -- | -- |
| 58.51 | 0.356 | 11.7 | 0.264 | 0.177 | -0.0216 | -- | -9.3 | 0.374 | 22.9 | 30.75 | 839 | -- | -- |
| 59.83 | 0.36 | 11.6 | 1.41 | 0.136 | -1.06 | -- | -- | 0.341 | 1.37 | 31.2 | 2055 | -- | -- |
| 60.35 | 0.362 | 11.7 | 0.257 | -- | 0.0337 | -- | -9.26 | 0.381 | -- | 30.8 | 842 | -- | -- |
| 92.53 | 0.451 | 11.6 | 1.17 | 0.128 | -- | 0.409 | -- | 0.511 | 5.01 | -- | -- | -- | -- |
| 92.94 | 0.451 | 11.6 | 1.17 | 0.131 | -- | -- | -- | 0.509 | 4.57 | -- | -- | -- | -- |
| 60.95 | 0.364 | 11.6 | 1.4 | -- | -1.05 | -- | -- | 0.349 | -- | 31.29 | 2029 | -- | -- |
| 109.62 | 0.488 | 11.6 | -- | 0.17 | -0.798 | -- | -- | 0.258 | 1.81 | 31.2 | 2029 | -- | -- |
| 93.85 | 0.453 | 11.6 | 1.17 | -- | -- | -- | -- | 0.512 | -- | -- | -- | -- | -- |
| 128.93 | 0.531 | 11.6 | -- | 0.153 | -- | -- | -- | 0.379 | 4.38 | -- | -- | -- | -- |
| 110.82 | 0.49 | 11.6 | -- | -- | -0.793 | -- | -- | 0.24 | -- | 31.25 | 2006 | -- | -- |
| 130.19 | 0.533 | 11.6 | -- | -- | -- | -- | -- | 0.382 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 58.82 | temperature | 30 | 720 | > th | dose independent | rect. | 16 | 21 |
| 2 | 58.94 | temperature | 30 | 720 | > th | dose independent | rect. | 16 | 19 |
| 3 | 58.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 16 |
| 4 | 59.09 | temperature | 30 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 10 | 59.22 | temperature | 30 | 1440 | > th | dose dependent | rect. | 12 | 5 |
| 22 | 59.38 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 2 |
| 85 | 59.65 | temperature | 30 | 1440 | > th | dose dependent | sin | 22 | NA |
| 105 | 59.67 | temperature | 30 | 1440 | > th | dose dependent | rect. | 16 | 23 |
| 126 | 59.70 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 2 |
| 147 | 59.75 | temperature | 30 | 1440 | > th | dose dependent | no | NA | NA |
| 287 | 59.92 | temperature | 30 | 720 | > th | dose independent | sin | 10 | NA |
| 338 | 60.19 | temperature | 10 | 720 | > th | dose dependent | sin | 1 | NA |
| 355 | 60.30 | temperature | 30 | 720 | < th | dose independent | sin | 10 | NA |
| 385 | 60.38 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 21 |
| 565 | 60.57 | humidity | 50 | 14400 | < th | dose dependent | rect. | 16 | 2 |
| 589 | 60.62 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 18 |
| 601 | 60.68 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 13 |
| 607 | 60.70 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 17 |
| 612 | 60.72 | humidity | 50 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 619 | 60.74 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 631 | 60.77 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 10 |
| 649 | 60.78 | temperature | 30 | 1440 | > th | dose independent | rect. | 9 | 4 |
| 650 | 60.78 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 7 |
| 651 | 60.78 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 8 |
| 654 | 60.79 | humidity | 50 | 14400 | > th | dose independent | rect. | 16 | 6 |
| 659 | 60.80 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 5 |
| 706 | 60.84 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 14 |
| 707 | 60.84 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 16 |
| 728 | 60.87 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 735 | 60.88 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 2 |
| 736 | 60.88 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 11 |
| 870 | 61.16 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 893 | 61.20 | temperature | 30 | 720 | > th | dose dependent | sin | 10 | NA |
| 902 | 61.24 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 9 |
| 916 | 61.25 | temperature | 30 | 1440 | < th | dose independent | rect. | 2 | 11 |
| 925 | 61.26 | temperature | 30 | 1440 | < th | dose independent | rect. | 7 | 6 |
| 938 | 61.27 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 17 |
| 943 | 61.28 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 15 |
| 949 | 61.29 | temperature | 30 | 720 | > th | dose independent | rect. | 10 | 23 |
| 964 | 61.31 | temperature | 30 | 720 | > th | dose independent | rect. | 9 | 10 |
| 984 | 61.33 | temperature | 30 | 720 | > th | dose independent | no | NA | NA |