BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0878800 Os01g0878800|AK070251
         (322 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G15093.1  | chr4:8618454-8619472 FORWARD LENGTH=270            291   4e-79

>AT4G15093.1 | chr4:8618454-8619472 FORWARD LENGTH=270
          Length = 269

 Score =  291 bits (744), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 141/256 (55%), Positives = 185/256 (72%), Gaps = 8/256 (3%)

Query: 59  TFFLSHGAPTLSIDDTIAAQGFFKSWLPAAVAGAELPRAILVVSGHWEAAAPTVNVIRGN 118
           TFFLSHG+PTLSIDD++ A+ FFKSW    +   + P++ILV+S HW+   P+VN +  N
Sbjct: 7   TFFLSHGSPTLSIDDSLEARQFFKSWTQKVLP--QKPKSILVISAHWDTKFPSVNTVLRN 64

Query: 119 NDTIHDFYGFPKAMYKLKYPAPGAPDLAMKTKELL-EQAGFGPVKENHSRGLDHGAWVPL 177
           N TIHDF GFP  MYKLKY APGA +L  + KELL ++ G   V E+  RGLDHGAWVPL
Sbjct: 65  N-TIHDFSGFPDPMYKLKYEAPGAIELGKRVKELLMKEGGMKRVDEDTKRGLDHGAWVPL 123

Query: 178 MFMYPEANVPVCQLSLQSGRDGAYHYELGRALAPLRDDGVLVLGSGSATHNLRRMG---P 234
           M MYPEA++P+CQLS+QS ++G+YHY +G+ALA L+D+GVL++GSGSATHNLR++     
Sbjct: 124 MLMYPEADIPICQLSVQSNQNGSYHYNMGKALASLKDEGVLIIGSGSATHNLRKLDFNIT 183

Query: 235 EGTPVPQWAAEFDGWLQEALLGGRHDDVKRYEEKAPHGRVAHPSPDHFLPLHVXXXXXXX 294
           +G+PVP WA EFD WL+++LL GR+ DV  +EEKAP+ ++AHP P+H  PLHV       
Sbjct: 184 DGSPVP-WALEFDHWLRDSLLQGRYGDVNEWEEKAPNAKMAHPWPEHLYPLHVVMGAAGG 242

Query: 295 XXXXXXIHRSWSNASL 310
                 IH SW   +L
Sbjct: 243 DAKAEQIHTSWQLGTL 258



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.135    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,448,331
Number of extensions: 272339
Number of successful extensions: 388
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 384
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 223
Effective length of database: 8,392,385
Effective search space: 1871501855
Effective search space used: 1871501855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)