Os01g0877300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Mitotic checkpoint family protein.
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Os01g0877300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Mitotic checkpoint family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.53 | 0.185 | 10.5 | -0.184 | 0.289 | -0.315 | 0.119 | 0.259 | -0.0814 | 14.3 | 78.67 | 73 | -- | -- |
| 15.62 | 0.184 | 10.5 | -0.19 | 0.286 | -0.301 | 0.216 | -- | -0.0818 | 14.3 | 79 | 74 | -- | -- |
| 15.57 | 0.184 | 10.5 | -0.18 | 0.291 | -0.316 | -- | 0.351 | -0.0806 | 14.3 | 78.98 | 72 | -- | -- |
| 15.79 | 0.185 | 10.5 | -0.182 | 0.286 | -0.297 | -- | -- | -0.0797 | 14.4 | 79 | 72 | -- | -- |
| 18.02 | 0.198 | 10.5 | -0.193 | -- | -0.363 | -- | 0.613 | -0.0869 | -- | 55.8 | 71 | -- | -- |
| 17.13 | 0.194 | 10.5 | -0.207 | 0.155 | -- | 0.188 | -- | -0.0664 | 13.7 | -- | -- | -- | -- |
| 17.26 | 0.195 | 10.5 | -0.201 | 0.156 | -- | -- | -- | -0.0652 | 14 | -- | -- | -- | -- |
| 18.08 | 0.198 | 10.5 | -0.17 | -- | -0.216 | -- | -- | -0.0908 | -- | 60.31 | 950 | -- | -- |
| 16.66 | 0.19 | 10.5 | -- | 0.296 | -0.311 | -- | -- | -0.06 | 14.4 | 79 | 72 | -- | -- |
| 18.72 | 0.202 | 10.5 | -0.208 | -- | -- | -- | -- | -0.0688 | -- | -- | -- | -- | -- |
| 18.32 | 0.2 | 10.5 | -- | 0.16 | -- | -- | -- | -0.0428 | 14 | -- | -- | -- | -- |
| 18.52 | 0.2 | 10.5 | -- | -- | -0.237 | -- | -- | -0.0624 | -- | 80 | 1036 | -- | -- |
| 19.86 | 0.208 | 10.5 | -- | -- | -- | -- | -- | -0.0458 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.62 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 4 | 5 |
| 5 | 13.86 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 5 | 3 |
| 22 | 14.16 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 5 |
| 26 | 14.27 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 3 |
| 36 | 14.39 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 5 | 6 |
| 40 | 14.41 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 5 | 19 |
| 42 | 14.43 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 11 | 10 |
| 44 | 14.46 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 6 | 18 |
| 48 | 14.50 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 18 |
| 52 | 14.52 | humidity | 50.0 | 270 | > th | dose independent | rect. | 14 | 9 |
| 72 | 14.59 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 5 | 22 |
| 83 | 14.63 | temperature | 20.0 | 270 | > th | dose independent | rect. | 4 | 18 |
| 102 | 14.67 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 11 | 19 |
| 134 | 14.75 | radiation | 1.0 | 270 | > th | dose independent | rect. | 9 | 9 |
| 141 | 14.75 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 6 | 18 |
| 148 | 14.77 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 10 | 18 |
| 149 | 14.77 | radiation | 1.0 | 270 | > th | dose independent | rect. | 9 | 20 |
| 172 | 14.80 | radiation | 30.0 | 270 | < th | dose independent | rect. | 13 | 10 |
| 173 | 14.80 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 17 |
| 176 | 14.80 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 13 | 10 |
| 177 | 14.80 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 11 | 14 |
| 189 | 14.82 | radiation | 1.0 | 90 | > th | dose independent | rect. | 11 | 8 |
| 216 | 14.84 | wind | 7.0 | 270 | < th | dose dependent | rect. | 5 | 4 |
| 220 | 14.85 | wind | 5.0 | 270 | < th | dose independent | rect. | 4 | 6 |
| 221 | 14.85 | humidity | 60.0 | 90 | > th | dose independent | rect. | 5 | 6 |
| 222 | 14.85 | humidity | 80.0 | 10 | < th | dose independent | rect. | 11 | 8 |
| 253 | 14.88 | wind | 5.0 | 270 | < th | dose independent | rect. | 5 | 4 |
| 259 | 14.88 | wind | 9.0 | 270 | < th | dose dependent | rect. | 4 | 6 |
| 279 | 14.89 | humidity | 50.0 | 10 | > th | dose independent | rect. | 5 | 22 |
| 295 | 14.91 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 11 | 18 |
| 302 | 14.91 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 11 | 18 |
| 365 | 14.96 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 5 | 6 |
| 367 | 14.96 | wind | 9.0 | 270 | < th | dose independent | rect. | 4 | 18 |
| 397 | 14.98 | radiation | 40.0 | 270 | < th | dose independent | rect. | 4 | 5 |
| 398 | 14.98 | wind | 7.0 | 270 | < th | dose independent | rect. | 22 | 6 |
| 400 | 14.98 | temperature | 10.0 | 90 | > th | dose independent | rect. | 5 | 6 |
| 402 | 14.98 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 5 | 6 |
| 406 | 14.98 | temperature | 10.0 | 90 | > th | dose independent | rect. | 11 | 18 |
| 416 | 14.99 | temperature | 15.0 | 270 | > th | dose independent | rect. | 22 | 6 |
| 417 | 14.99 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 5 | 6 |
| 418 | 14.99 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 22 | 6 |
| 433 | 14.99 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 5 | 6 |
| 434 | 14.99 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 22 | 6 |
| 460 | 15.01 | temperature | 30.0 | 270 | < th | dose independent | rect. | 22 | 6 |
| 462 | 15.01 | humidity | 50.0 | 270 | > th | dose independent | rect. | 22 | 6 |
| 465 | 15.01 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 22 | 6 |
| 466 | 15.01 | radiation | 1.0 | 270 | < th | dose independent | rect. | 22 | 6 |
| 473 | 15.01 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 9 | 8 |
| 475 | 15.01 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 18 |
| 480 | 15.01 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 22 | 6 |
| 491 | 15.02 | wind | 1.0 | 270 | > th | dose independent | rect. | 23 | 5 |
| 516 | 15.02 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 11 | 13 |
| 517 | 15.02 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 21 | 14 |
| 539 | 15.03 | radiation | 10.0 | 270 | < th | dose independent | rect. | 4 | 19 |
| 541 | 15.03 | humidity | 50.0 | 30 | > th | dose dependent | sin | 19 | NA |
| 545 | 15.03 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 14 | 10 |
| 550 | 15.04 | humidity | 80.0 | 270 | > th | dose independent | rect. | 5 | 3 |
| 559 | 15.04 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 9 | 8 |
| 563 | 15.04 | radiation | 10.0 | 90 | < th | dose independent | rect. | 6 | 18 |
| 568 | 15.04 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 9 | 8 |
| 580 | 15.05 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 6 | 5 |
| 593 | 15.05 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 5 | 4 |
| 611 | 15.06 | wind | 1.0 | 270 | > th | dose independent | rect. | 22 | 7 |
| 614 | 15.06 | wind | 9.0 | 90 | < th | dose independent | rect. | 11 | 18 |
| 679 | 15.07 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 15 | 9 |
| 695 | 15.08 | radiation | 40.0 | 270 | < th | dose independent | rect. | 17 | 16 |
| 725 | 15.09 | humidity | 90.0 | 30 | < th | dose dependent | sin | 19 | NA |
| 736 | 15.10 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 23 | 5 |
| 791 | 15.12 | temperature | 30.0 | 270 | < th | dose independent | rect. | 4 | 5 |
| 795 | 15.12 | temperature | 10.0 | 270 | > th | dose independent | rect. | 9 | 8 |
| 796 | 15.12 | temperature | 20.0 | 270 | > th | dose independent | rect. | 9 | 8 |
| 797 | 15.12 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 9 | 8 |
| 799 | 15.12 | wind | 9.0 | 270 | < th | dose independent | rect. | 17 | 16 |
| 801 | 15.12 | temperature | 10.0 | 270 | > th | dose independent | rect. | 17 | 16 |
| 810 | 15.12 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 5 | 6 |
| 833 | 15.13 | temperature | 30.0 | 270 | < th | dose independent | rect. | 5 | 3 |
| 873 | 15.13 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 18 | 15 |
| 894 | 15.14 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 4 | 6 |
| 914 | 15.15 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 4 | 18 |
| 957 | 15.16 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 24 | 7 |
| 976 | 15.17 | radiation | 30.0 | 270 | < th | dose independent | rect. | 18 | 14 |