BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0877300 Os01g0877300|AK073302
         (720 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0877300  Mitotic checkpoint family protein                  1360   0.0  

>Os01g0877300 Mitotic checkpoint family protein
          Length = 720

 Score = 1360 bits (3520), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 682/720 (94%), Positives = 682/720 (94%)

Query: 1   MILRTPPQRKXXXXXXXXXXXXXXXXXXXXXDRRLVLYDRPTALVPAGVPGEPMDDMVCT 60
           MILRTPPQRK                     DRRLVLYDRPTALVPAGVPGEPMDDMVCT
Sbjct: 1   MILRTPPQRKRRADSDVDAAAATATTRSPVSDRRLVLYDRPTALVPAGVPGEPMDDMVCT 60

Query: 61  YHCRQMVKSEFMVALDTAEKQVQEYRATLDDMEERLSKSEDERATCQDKLNYVEQELAAT 120
           YHCRQMVKSEFMVALDTAEKQVQEYRATLDDMEERLSKSEDERATCQDKLNYVEQELAAT
Sbjct: 61  YHCRQMVKSEFMVALDTAEKQVQEYRATLDDMEERLSKSEDERATCQDKLNYVEQELAAT 120

Query: 121 KGRESAMQERLLKEVGDFQERYCDQIKKIGELETQLKKEIDSRIXXXXXXXXXXXXXXXX 180
           KGRESAMQERLLKEVGDFQERYCDQIKKIGELETQLKKEIDSRI                
Sbjct: 121 KGRESAMQERLLKEVGDFQERYCDQIKKIGELETQLKKEIDSRIAAESSSASAKESVKEL 180

Query: 181 XGNLQRLSENSEREKKALKKKLSYLQDDTKLSISKLNAELERMRLRALNSEDEAKLLNEQ 240
            GNLQRLSENSEREKKALKKKLSYLQDDTKLSISKLNAELERMRLRALNSEDEAKLLNEQ
Sbjct: 181 EGNLQRLSENSEREKKALKKKLSYLQDDTKLSISKLNAELERMRLRALNSEDEAKLLNEQ 240

Query: 241 LEDLKKQLDESVRENNEMEHRLLNCSSLSYERTPSDDQKLIKLLQEELRNYEKEVDEARR 300
           LEDLKKQLDESVRENNEMEHRLLNCSSLSYERTPSDDQKLIKLLQEELRNYEKEVDEARR
Sbjct: 241 LEDLKKQLDESVRENNEMEHRLLNCSSLSYERTPSDDQKLIKLLQEELRNYEKEVDEARR 300

Query: 301 LKSSHTNVELLKEKILEEQGCRERAEMELSKLQEIEAKAQKLELELASCTALLSNIPDVS 360
           LKSSHTNVELLKEKILEEQGCRERAEMELSKLQEIEAKAQKLELELASCTALLSNIPDVS
Sbjct: 301 LKSSHTNVELLKEKILEEQGCRERAEMELSKLQEIEAKAQKLELELASCTALLSNIPDVS 360

Query: 361 SFGDIPQKIADLQKQALTNLNKVGEVTSQLKELKVALEFADLSKQRAEGEATLAKERAES 420
           SFGDIPQKIADLQKQALTNLNKVGEVTSQLKELKVALEFADLSKQRAEGEATLAKERAES
Sbjct: 361 SFGDIPQKIADLQKQALTNLNKVGEVTSQLKELKVALEFADLSKQRAEGEATLAKERAES 420

Query: 421 ATREIKRLELLLAAISEERDRLRKDHAVSKSRDGDDASSKNMESDLSRMEKVVTELESTI 480
           ATREIKRLELLLAAISEERDRLRKDHAVSKSRDGDDASSKNMESDLSRMEKVVTELESTI
Sbjct: 421 ATREIKRLELLLAAISEERDRLRKDHAVSKSRDGDDASSKNMESDLSRMEKVVTELESTI 480

Query: 481 RDQRELISQQHTELNLMNEKLSIESRKAKSLERDGDQLRSQVALLESKLGHGDYSASSTK 540
           RDQRELISQQHTELNLMNEKLSIESRKAKSLERDGDQLRSQVALLESKLGHGDYSASSTK
Sbjct: 481 RDQRELISQQHTELNLMNEKLSIESRKAKSLERDGDQLRSQVALLESKLGHGDYSASSTK 540

Query: 541 VLRMVNTLAVDNEAKQTIEALQAELKKTKERLQAVEELKGQADVGTVVDVNIAEKLAQLK 600
           VLRMVNTLAVDNEAKQTIEALQAELKKTKERLQAVEELKGQADVGTVVDVNIAEKLAQLK
Sbjct: 541 VLRMVNTLAVDNEAKQTIEALQAELKKTKERLQAVEELKGQADVGTVVDVNIAEKLAQLK 600

Query: 601 NQIATLEKREERYKAVFAERISVFRKACCSLFGYKIVMNDQQQSNGIPVTRFILHSVYAQ 660
           NQIATLEKREERYKAVFAERISVFRKACCSLFGYKIVMNDQQQSNGIPVTRFILHSVYAQ
Sbjct: 601 NQIATLEKREERYKAVFAERISVFRKACCSLFGYKIVMNDQQQSNGIPVTRFILHSVYAQ 660

Query: 661 SDDEKLEFDYESGSTNIVVNDYTSQHEIAQQVDIFIRKMNSIPAFTANLTMESFNKRSIC 720
           SDDEKLEFDYESGSTNIVVNDYTSQHEIAQQVDIFIRKMNSIPAFTANLTMESFNKRSIC
Sbjct: 661 SDDEKLEFDYESGSTNIVVNDYTSQHEIAQQVDIFIRKMNSIPAFTANLTMESFNKRSIC 720



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.311    0.127    0.331 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,657,583
Number of extensions: 694215
Number of successful extensions: 4575
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 4567
Number of HSP's successfully gapped: 9
Length of query: 720
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 612
Effective length of database: 11,396,689
Effective search space: 6974773668
Effective search space used: 6974773668
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 160 (66.2 bits)