BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0877300 Os01g0877300|AK073302
         (720 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G49880.1  | chr5:20282305-20287775 FORWARD LENGTH=727          634   0.0  

>AT5G49880.1 | chr5:20282305-20287775 FORWARD LENGTH=727
          Length = 726

 Score =  634 bits (1636), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/738 (48%), Positives = 497/738 (67%), Gaps = 32/738 (4%)

Query: 1   MILRTP-PQRKXXXXXXXXXXXXXXXXXXXXXDRRLVLY-DRPTALVPAGVP-----GEP 53
           MILRTP P+R                        +L++Y D P   +PA  P        
Sbjct: 1   MILRTPQPKR-----LRSDAGESPFPTGATGSGNQLIIYEDSP---LPAPAPLQTSHDHS 52

Query: 54  MDDMVCTYHCRQMVKSEFMVALDTAEKQVQEYRATLDDMEERLSKSEDERATCQDKLNYV 113
            D  +CTY CRQMVK++ + AL TAEKQV+E +  L  +    ++++ ER   +DK  Y 
Sbjct: 53  ADQHLCTYQCRQMVKADVLDALSTAEKQVEESKTKLQTLNANFTEADAERKHFRDKFLYS 112

Query: 114 EQELAATKGRESAMQERLLKEVGDFQERYCDQIKKIGELETQLKKEIDSRIXXXXXXXXX 173
           EQELAA K RE  +QE+LL E+ + QERY  +++   ELE +L+ E++ R          
Sbjct: 113 EQELAAAKAREKMLQEQLLMEINNSQERYTKELQSCHELEVKLQNEMNLRKKAESSAATA 172

Query: 174 XXXXXXXXGNLQRLSENSEREKKALKKKLSYLQDDTKLSISKLNAELERMRLRALNSEDE 233
                     L +LS + +REKK L   ++ L  + KLS++++ A+LERM+ RA N+E E
Sbjct: 173 EEKAKLLEDKLTQLSGSVDREKKRLNNDIAQLGKEAKLSVARIGADLERMQCRAQNAETE 232

Query: 234 AKLLNEQLEDLKKQLDESVRENNEMEHRLLNCSSLSYER-TPSDDQKLIKLLQEELRNYE 292
           + LL  QLE LK   DE ++E  E++ +L   SS + E  + SD+  L+K LQEEL+ YE
Sbjct: 233 SNLLRSQLEHLKLIFDECLQEKTEVDKKL---SSFTSEAASSSDNSVLVKHLQEELKRYE 289

Query: 293 KEVDEARRLKSSHTNVELLKEKILEEQGCRERAEMELSKLQEIEAKAQKLELELASCTAL 352
            EV EAR+LKS H + ELL   +LEEQ  RERAE ELSK  +++   +KLE EL+S  +L
Sbjct: 290 AEVREARKLKSRHLDAELLNVNLLEEQSRRERAESELSKFHDLQLSMEKLENELSSWKSL 349

Query: 353 LSNIPDVSSFGDIPQKIADLQKQALTNLNKVGEVTSQLKELKVALEFADLSKQRAEGEAT 412
           L++IP VS   DI  + + LQ + + +  K+GE ++++K+L+  LE   L +Q A  EA 
Sbjct: 350 LNDIPGVSCPDDIVMRFSVLQNEVVQSTMKIGEASTRIKQLEETLEAIQLGRQNAVSEAA 409

Query: 413 LAKERAESATREIKRLELLLAAISEERDRLR----------KDHAVSKSRDGDDASSKNM 462
           LAKE++E+   ++KR+E++L  ++EE+++L+           + +VS + DG  A  +  
Sbjct: 410 LAKEKSEALKTDVKRIEVMLTLVTEEKEQLKAVVNELRKSNSEGSVSGAADG--ALIQGF 467

Query: 463 ESDLSRMEKVVTELESTIRDQRELISQQHTELNLMNEKLSIESRKAKSLERDGDQLRSQV 522
           ES L++ E  + +LE  +   +++ ++Q TE+ L+NEKL  E+R+ KSLERD D+LRS++
Sbjct: 468 ESSLAKKENYIKDLEQDLNQLKDVNNRQRTEIELLNEKLVDEARRNKSLERDSDRLRSEI 527

Query: 523 ALLESKLGHGDYSASSTKVLRMVNTLAVDNEAKQTIEALQAELKKTKERLQAVEELKGQA 582
           +LLESKLGHGDYSA++T+VLRMVNTL V+NEAKQTIEALQAEL+KTKERLQAVEELK Q+
Sbjct: 528 SLLESKLGHGDYSAANTRVLRMVNTLGVENEAKQTIEALQAELQKTKERLQAVEELKSQS 587

Query: 583 -DVGTVVDVNIAEKLAQLKNQIATLEKREERYKAVFAERISVFRKACCSLFGYKIVMNDQ 641
            D G +VD +I  K+AQLK Q ATLEKREERYK VFA+RISVFR+ACC LFGYKIVM++ 
Sbjct: 588 GDAGKLVDSHITGKIAQLKEQNATLEKREERYKTVFADRISVFRRACCELFGYKIVMDEH 647

Query: 642 QQSNGIPVTRFILHSVYAQSDDEKLEFDYESGSTNIVVNDYTSQHEIAQQVDIFIRKMNS 701
           Q+ NGIPVTRF L S+YAQSDDEKLEF+YESG+T+I+ N+Y SQ +IA+Q++IFIRK NS
Sbjct: 648 QRPNGIPVTRFTLQSIYAQSDDEKLEFEYESGNTSILNNEYASQGDIAKQIEIFIRKFNS 707

Query: 702 IPAFTANLTMESFNKRSI 719
           IPAFTANLTMESFN+R++
Sbjct: 708 IPAFTANLTMESFNRRTL 725



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.127    0.331 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 12,807,509
Number of extensions: 514563
Number of successful extensions: 4140
Number of sequences better than 1.0e-05: 66
Number of HSP's gapped: 3976
Number of HSP's successfully gapped: 138
Length of query: 720
Length of database: 11,106,569
Length adjustment: 106
Effective length of query: 614
Effective length of database: 8,200,473
Effective search space: 5035090422
Effective search space used: 5035090422
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 115 (48.9 bits)