Os01g0873100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Amidophosphoribosyltransferase, chloroplast precursor (EC 2.4.2.14) (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPAT).
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Os01g0873100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Amidophosphoribosyltransferase, chloroplast precursor (EC 2.4.2.14) (Glutamine phosphoribosylpyrophosphate amidotransferase) (ATASE) (GPAT).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 92.52 | 0.452 | 13.8 | -0.452 | 0.971 | 2.03 | -2.53 | 1.56 | 0.11 | 1.78 | 0.4365 | 624 | -- | -- |
| 94.14 | 0.452 | 13.8 | -0.474 | 0.79 | 2.3 | -2.03 | -- | 0.101 | 0.734 | 1.592 | 607 | -- | -- |
| 95.54 | 0.459 | 13.8 | -0.439 | 2.41 | 0.452 | -- | -1.52 | 0.0722 | 4.63 | 0.4365 | 624 | -- | -- |
| 108.09 | 0.484 | 13.8 | -0.414 | 0.802 | 2.16 | -- | -- | 0.161 | 1.52 | 1.047 | 593 | -- | -- |
| 103.48 | 0.474 | 13.8 | -0.25 | -- | 2.54 | -- | -1.49 | 0.174 | -- | 1.56 | 494 | -- | -- |
| 110.14 | 0.492 | 13.8 | -0.516 | 2.58 | -- | -1.15 | -- | 0.0453 | 3.79 | -- | -- | -- | -- |
| 113.91 | 0.5 | 13.8 | -0.499 | 2.58 | -- | -- | -- | 0.0517 | 3.86 | -- | -- | -- | -- |
| 108.7 | 0.486 | 13.8 | -0.262 | -- | 2.57 | -- | -- | 0.167 | -- | 1.001 | 506 | -- | -- |
| 109.62 | 0.488 | 13.8 | -- | 0.568 | 2.16 | -- | -- | 0.185 | 2.19 | 0.7879 | 549 | -- | -- |
| 480.25 | 1.02 | 13.8 | -0.392 | -- | -- | -- | -- | 0.121 | -- | -- | -- | -- | -- |
| 120.47 | 0.513 | 13.8 | -- | 2.57 | -- | -- | -- | 0.107 | 3.86 | -- | -- | -- | -- |
| 110.91 | 0.49 | 13.8 | -- | -- | 2.57 | -- | -- | 0.189 | -- | 0.83 | 506 | -- | -- |
| 484.31 | 1.03 | 13.8 | -- | -- | -- | -- | -- | 0.164 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 84.45 | temperature | 25.0 | 270 | < th | dose independent | rect. | 15 | 8 |
| 17 | 86.43 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 16 | 8 |
| 22 | 86.72 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 16 | 13 |
| 39 | 87.50 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 15 | 7 |
| 65 | 88.74 | temperature | 30.0 | 10 | < th | dose dependent | sin | 15 | NA |
| 70 | 88.88 | temperature | 30.0 | 90 | < th | dose dependent | sin | 16 | NA |
| 78 | 89.02 | temperature | 25.0 | 90 | < th | dose independent | sin | 16 | NA |
| 84 | 89.33 | temperature | 25.0 | 270 | < th | dose independent | sin | 18 | NA |
| 88 | 89.41 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 17 | 12 |
| 124 | 90.02 | radiation | 1.0 | 270 | > th | dose independent | rect. | 9 | 22 |
| 137 | 90.30 | radiation | 1.0 | 90 | < th | dose independent | rect. | 16 | 13 |
| 148 | 90.49 | wind | 1.0 | 90 | > th | dose independent | rect. | 17 | 12 |
| 149 | 90.52 | temperature | 30.0 | 720 | < th | dose independent | rect. | 7 | 8 |
| 151 | 90.62 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 17 | 7 |
| 169 | 90.77 | radiation | 1.0 | 90 | < th | dose dependent | sin | 16 | NA |
| 181 | 90.86 | wind | 1.0 | 720 | > th | dose independent | rect. | 8 | 18 |
| 190 | 90.97 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 17 | 1 |
| 199 | 91.03 | wind | 1.0 | 720 | > th | dose independent | rect. | 17 | 9 |
| 201 | 91.05 | temperature | 30.0 | 720 | < th | dose independent | rect. | 7 | 21 |
| 238 | 91.36 | radiation | 1.0 | 90 | < th | dose independent | rect. | 16 | 8 |
| 245 | 91.39 | radiation | 1.0 | 90 | < th | dose independent | sin | 15 | NA |
| 249 | 91.43 | temperature | 25.0 | 270 | < th | dose independent | rect. | 19 | 1 |
| 251 | 91.43 | humidity | 70.0 | 10 | > th | dose independent | rect. | 16 | 8 |
| 279 | 91.61 | temperature | 30.0 | 720 | < th | dose independent | rect. | 6 | 13 |
| 289 | 91.70 | temperature | 30.0 | 720 | < th | dose independent | rect. | 7 | 11 |
| 304 | 91.79 | wind | 1.0 | 90 | > th | dose independent | sin | 11 | NA |
| 306 | 91.80 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 16 | 13 |
| 309 | 91.83 | radiation | 1.0 | 270 | < th | dose dependent | sin | 20 | NA |
| 311 | 91.84 | humidity | 70.0 | 10 | > th | dose independent | rect. | 16 | 13 |
| 313 | 91.85 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 17 | 17 |
| 324 | 91.90 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 17 | 15 |
| 329 | 91.92 | temperature | 30.0 | 720 | < th | dose independent | rect. | 3 | 16 |
| 345 | 91.97 | temperature | 30.0 | 720 | < th | dose independent | rect. | 13 | 15 |
| 357 | 92.00 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 16 | 17 |
| 381 | 92.14 | temperature | 30.0 | 720 | < th | dose independent | sin | 1 | NA |
| 393 | 92.17 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 16 | 19 |
| 408 | 92.24 | temperature | 25.0 | 720 | < th | dose independent | rect. | 17 | 1 |
| 439 | 92.38 | radiation | 1.0 | 270 | < th | dose independent | sin | 20 | NA |
| 481 | 92.56 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 4 | 20 |
| 482 | 92.56 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 6 | 23 |
| 486 | 92.58 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 23 | 20 |
| 499 | 92.64 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 24 | 16 |
| 510 | 92.68 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 14 | 7 |
| 525 | 92.72 | wind | 1.0 | 30 | > th | dose independent | rect. | 16 | 8 |
| 527 | 92.73 | humidity | 50.0 | 30 | > th | dose independent | rect. | 24 | 16 |
| 561 | 92.81 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 16 | 8 |
| 580 | 92.88 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 17 | 10 |
| 589 | 92.91 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 604 | 92.98 | wind | 1.0 | 720 | > th | dose independent | rect. | 8 | 10 |
| 618 | 93.02 | radiation | 1.0 | 90 | < th | dose independent | rect. | 6 | 23 |
| 621 | 93.03 | wind | 9.0 | 30 | < th | dose independent | rect. | 16 | 8 |
| 623 | 93.03 | radiation | 30.0 | 30 | < th | dose dependent | rect. | 16 | 8 |
| 636 | 93.07 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 16 | 8 |
| 660 | 93.12 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 16 | 8 |
| 664 | 93.12 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 16 | 8 |
| 687 | 93.18 | temperature | 15.0 | 10 | > th | dose independent | rect. | 24 | 16 |
| 688 | 93.18 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 24 | 16 |
| 691 | 93.19 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 17 | 8 |
| 694 | 93.19 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 17 | 8 |
| 700 | 93.19 | radiation | 1.0 | 720 | < th | dose independent | rect. | 17 | 10 |
| 701 | 93.19 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 1 | 16 |
| 708 | 93.20 | temperature | 10.0 | 10 | > th | dose independent | rect. | 16 | 8 |
| 710 | 93.20 | radiation | 40.0 | 10 | < th | dose independent | rect. | 16 | 8 |
| 714 | 93.21 | wind | 9.0 | 30 | < th | dose independent | rect. | 24 | 16 |
| 730 | 93.23 | radiation | 1.0 | 90 | < th | dose independent | rect. | 9 | 15 |
| 735 | 93.25 | radiation | 20.0 | 30 | < th | dose independent | rect. | 16 | 8 |
| 758 | 93.31 | radiation | 1.0 | 90 | < th | dose independent | rect. | 16 | 19 |
| 767 | 93.33 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 24 | 16 |
| 769 | 93.33 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 24 | 16 |
| 774 | 93.35 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 775 | 93.36 | radiation | 1.0 | 90 | < th | dose independent | rect. | 9 | 20 |
| 835 | 93.49 | radiation | 1.0 | 270 | > th | dose independent | sin | 23 | NA |
| 850 | 93.50 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 11 | 12 |
| 852 | 93.51 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 5 | 11 |
| 883 | 93.57 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 19 | 1 |
| 895 | 93.60 | radiation | 1.0 | 270 | < th | dose independent | rect. | 14 | 7 |
| 926 | 93.66 | radiation | 1.0 | 720 | > th | dose independent | rect. | 11 | 19 |
| 942 | 93.69 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 18 | 7 |
| 968 | 93.71 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 18 | 7 |