BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0873100 Os01g0873100|AK070841
         (105 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G34740.1  | chr4:16574894-16576579 REVERSE LENGTH=562          117   8e-28
AT4G38880.1  | chr4:18134116-18135714 FORWARD LENGTH=533          115   3e-27
AT2G16570.1  | chr2:7180424-7182124 REVERSE LENGTH=567            115   6e-27

>AT4G34740.1 | chr4:16574894-16576579 REVERSE LENGTH=562
          Length = 561

 Score =  117 bits (294), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 67/86 (77%)

Query: 1   KIVRLLRDAGAREVHMRIASPPVIGSCLYGIDTPSEGELISNRMDLEGVRRAIGCDSLAF 60
           KIVRLLR+AGA+EVHMRIASPP+I SC YG+DTPS  ELISNRM ++ +R  IGCDSLAF
Sbjct: 443 KIVRLLREAGAKEVHMRIASPPIIASCYYGVDTPSSNELISNRMSVDEIRDYIGCDSLAF 502

Query: 61  LSLDKLHTIYGDEAHELCDACFSRNY 86
           LS + L    G+++   C ACF+ +Y
Sbjct: 503 LSFETLKKHLGEDSRSFCYACFTGDY 528



>AT4G38880.1 | chr4:18134116-18135714 FORWARD LENGTH=533
          Length = 532

 Score =  115 bits (289), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 53/87 (60%), Positives = 66/87 (75%), Gaps = 1/87 (1%)

Query: 1   KIVRLLRDAGAREVHMRIASPPVIGSCLYGIDTPSEGELISNRMDLEGVRRAIGCDSLAF 60
           KIVR+LRDAGA+EVHMRIA PP+I SC YG+DTP   ELIS++M +E +++ I CDSLAF
Sbjct: 433 KIVRMLRDAGAKEVHMRIALPPMIASCYYGVDTPRSQELISSKMSVEAIQKHINCDSLAF 492

Query: 61  LSLDKLHTIYGD-EAHELCDACFSRNY 86
           L LD L  +YG  E+H  C ACF+  Y
Sbjct: 493 LPLDSLKGVYGPVESHRYCYACFTGKY 519



>AT2G16570.1 | chr2:7180424-7182124 REVERSE LENGTH=567
          Length = 566

 Score =  115 bits (287), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 52/86 (60%), Positives = 64/86 (74%)

Query: 1   KIVRLLRDAGAREVHMRIASPPVIGSCLYGIDTPSEGELISNRMDLEGVRRAIGCDSLAF 60
           KIVRLLR+AGA+EVHMRIASPP++ SC YG+DTPS  ELISNR+ +E +   IG DSLAF
Sbjct: 447 KIVRLLREAGAKEVHMRIASPPIVASCYYGVDTPSSEELISNRLSVEEINEFIGSDSLAF 506

Query: 61  LSLDKLHTIYGDEAHELCDACFSRNY 86
           LS D L    G ++   C ACF+ +Y
Sbjct: 507 LSFDTLKKHLGKDSKSFCYACFTGDY 532



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.140    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,954,666
Number of extensions: 66647
Number of successful extensions: 138
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 3
Length of query: 105
Length of database: 11,106,569
Length adjustment: 75
Effective length of query: 30
Effective length of database: 9,050,369
Effective search space: 271511070
Effective search space used: 271511070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)