BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0873100 Os01g0873100|AK070841
         (105 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0873100  Similar to Amidophosphoribosyltransferase, chl...   182   5e-47
Os05g0430800  Similar to Amidophosphoribosyltransferase, chl...   159   3e-40

>Os01g0873100 Similar to Amidophosphoribosyltransferase, chloroplast precursor
           (EC 2.4.2.14) (Glutamine phosphoribosylpyrophosphate
           amidotransferase) (ATASE) (GPAT)
          Length = 105

 Score =  182 bits (462), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 91/105 (86%), Positives = 91/105 (86%)

Query: 1   KIVRLLRDAGAREVHMRIASPPVIGSCLYGIDTPSEGELISNRMDLEGVRRAIGCDSLAF 60
           KIVRLLRDAGAREVHMRIASPPVIGSCLYGIDTPSEGELISNRMDLEGVRRAIGCDSLAF
Sbjct: 1   KIVRLLRDAGAREVHMRIASPPVIGSCLYGIDTPSEGELISNRMDLEGVRRAIGCDSLAF 60

Query: 61  LSLDKLHTIYGDEAHELCDACFSRNYXXXXXXXXXXXXXXSAFED 105
           LSLDKLHTIYGDEAHELCDACFSRNY              SAFED
Sbjct: 61  LSLDKLHTIYGDEAHELCDACFSRNYPVLPTVPEPVPELVSAFED 105



>Os05g0430800 Similar to Amidophosphoribosyltransferase, chloroplast precursor
           (EC 2.4.2.14) (Glutamine phosphoribosylpyrophosphate
           amidotransferase) (ATASE) (GPAT)
          Length = 541

 Score =  159 bits (403), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 77/86 (89%), Positives = 79/86 (91%)

Query: 1   KIVRLLRDAGAREVHMRIASPPVIGSCLYGIDTPSEGELISNRMDLEGVRRAIGCDSLAF 60
           KIVRLLRDAGAREVHMRIASPPV+GSCLYGIDTPSEGELISNRMDLEGVRR IG DSLAF
Sbjct: 441 KIVRLLRDAGAREVHMRIASPPVVGSCLYGIDTPSEGELISNRMDLEGVRREIGSDSLAF 500

Query: 61  LSLDKLHTIYGDEAHELCDACFSRNY 86
           LSL KLH+IYG EA   CDACFSRNY
Sbjct: 501 LSLGKLHSIYGAEAEGYCDACFSRNY 526



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.140    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,178,395
Number of extensions: 110807
Number of successful extensions: 204
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 204
Number of HSP's successfully gapped: 2
Length of query: 105
Length of database: 17,035,801
Length adjustment: 73
Effective length of query: 32
Effective length of database: 13,224,179
Effective search space: 423173728
Effective search space used: 423173728
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)