Os01g0872900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF635 family protein.
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Os01g0872900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF635 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 539.75 | 1.09 | 6.85 | -3.57 | 3.81 | -1.85 | -1.62 | 2.98 | 3.59 | 5.46 | 19.9 | 2911 | 23.3 | 1.82 |
| 568.21 | 1.11 | 6.85 | -4.33 | 3.82 | -1.87 | -0.822 | -- | 3.62 | 5.53 | 19.95 | 2948 | 22.8 | 4.25 |
| 542.4 | 1.08 | 6.84 | -3.56 | 3.8 | -1.97 | -- | 2.84 | 3.57 | 5.48 | 19.9 | 2958 | 22.8 | 3.17 |
| 568.56 | 1.11 | 6.88 | -4.2 | 3.87 | -1.91 | -- | -- | 3.64 | 5.54 | 19.9 | 2952 | 22.4 | 5.05 |
| 1282.79 | 1.67 | 6.89 | -3.54 | -- | -1.41 | -- | 2.54 | 3.6 | -- | 19.91 | 8673 | 22.8 | 2.64 |
| 701.6 | 1.24 | 7.14 | -5.61 | 3.63 | -- | -0.515 | -- | 2.68 | 5.64 | -- | -- | -- | -- |
| 702.18 | 1.24 | 7.14 | -5.62 | 3.62 | -- | -- | -- | 2.68 | 5.68 | -- | -- | -- | -- |
| 1278.87 | 1.67 | 6.93 | -4.02 | -- | -1.77 | -- | -- | 3.68 | -- | 20.6 | 20157 | 23.7 | 3.37 |
| 597.42 | 1.14 | 6.72 | -- | 3.66 | -4.47 | -- | -- | 4.5 | 5.56 | 18 | 47520 | 0.231 | 2.7 |
| 1383.56 | 1.74 | 7.2 | -5.5 | -- | -- | -- | -- | 2.77 | -- | -- | -- | -- | -- |
| 1533.26 | 1.83 | 7 | -- | 3.53 | -- | -- | -- | 3.31 | 5.75 | -- | -- | -- | -- |
| 1286.49 | 1.67 | 6.81 | -- | -- | -4.6 | -- | -- | 4.54 | -- | 18.07 | 47520 | 22.2 | 2.13 |
| 2181.58 | 2.18 | 7.06 | -- | -- | -- | -- | -- | 3.38 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 553.74 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 4 | 555.30 | radiation | 10 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 6 | 555.56 | temperature | 20 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 7 | 555.66 | temperature | 20 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 11 | 557.80 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 7 |
| 34 | 559.06 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 5 |
| 68 | 560.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 90 | 561.63 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 2 |
| 109 | 562.52 | temperature | 20 | 4320 | < th | dose independent | rect. | 1 | 2 |
| 128 | 563.09 | temperature | 20 | 4320 | > th | dose independent | sin | 12 | NA |
| 178 | 564.94 | temperature | 20 | 4320 | < th | dose independent | sin | 12 | NA |
| 238 | 566.70 | humidity | 70 | 43200 | < th | dose dependent | rect. | 22 | 10 |
| 292 | 568.23 | temperature | 20 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 301 | 568.46 | temperature | 20 | 4320 | > th | dose independent | rect. | 7 | 18 |
| 354 | 569.44 | temperature | 20 | 4320 | < th | dose independent | rect. | 7 | 18 |
| 377 | 569.87 | temperature | 20 | 4320 | > th | dose independent | rect. | 11 | 14 |
| 395 | 570.12 | temperature | 25 | 4320 | < th | dose dependent | rect. | 7 | 4 |
| 400 | 570.17 | humidity | 60 | 43200 | < th | dose dependent | rect. | 5 | 3 |
| 418 | 570.47 | temperature | 20 | 4320 | < th | dose independent | rect. | 11 | 13 |
| 553 | 572.26 | temperature | 25 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 554 | 572.26 | radiation | 1 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 581 | 572.44 | temperature | 20 | 4320 | > th | dose independent | rect. | 7 | 23 |
| 644 | 573.20 | humidity | 70 | 43200 | > th | dose independent | rect. | 24 | 7 |
| 648 | 573.24 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 652 | 573.29 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 687 | 573.81 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 695 | 573.90 | humidity | 60 | 43200 | > th | dose independent | rect. | 22 | 10 |
| 720 | 574.12 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 725 | 574.15 | humidity | 90 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 737 | 574.22 | temperature | 20 | 4320 | < th | dose independent | rect. | 7 | 23 |
| 751 | 574.34 | temperature | 20 | 4320 | > th | dose independent | rect. | 23 | 23 |
| 771 | 574.48 | radiation | 1 | 43200 | < th | dose dependent | rect. | 1 | 4 |
| 796 | 574.69 | temperature | 25 | 14400 | > th | dose independent | rect. | 11 | 1 |
| 841 | 574.95 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 880 | 575.17 | wind | 1 | 43200 | < th | dose dependent | rect. | 11 | 19 |
| 882 | 575.18 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 889 | 575.22 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 925 | 575.38 | temperature | 25 | 14400 | < th | dose independent | rect. | 10 | 2 |