BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0872900 Os01g0872900|AK106574
         (358 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G13770.1  | chr2:5736603-5737847 FORWARD LENGTH=344            132   3e-31

>AT2G13770.1 | chr2:5736603-5737847 FORWARD LENGTH=344
          Length = 343

 Score =  132 bits (332), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 59/105 (56%), Positives = 75/105 (71%)

Query: 187 KGEAPQVQFSVNGNEYGTGYYLADGIYPEWAAFMKTIPLPQTEKHKLFAKHQEGARKDVE 246
           +G AP   + +NG  Y  GYYLADGIYP+W+  ++TI  P+  K KLFA  QE  RKDVE
Sbjct: 206 EGTAPPASYVINGKPYNMGYYLADGIYPKWSTLVQTIHDPRGPKKKLFAMKQEACRKDVE 265

Query: 247 RAFGVLQSRFTIVRRPARLWRRKSVGRIMLACVILHNMIVEDERE 291
           RAFGVLQ RF IV  P+RLW +  +  IM +C+I+HNMI+EDER+
Sbjct: 266 RAFGVLQLRFAIVAGPSRLWNKTVLHDIMTSCIIMHNMIIEDERD 310




 Score =  121 bits (304), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 59/101 (58%), Positives = 73/101 (72%)

Query: 12  LFLRIVNALGQCSPYFTYRVDCTGRIGLSPLQKCTAAMRMLAYGTPADALDEYLKIGKCT 71
           LFLRI +A+ +   YF  R D  G++GLS LQK TAA RMLAYG PAD+ DEY+KIG+ T
Sbjct: 103 LFLRIYDAIKRHDNYFVQRRDGVGKLGLSGLQKMTAAFRMLAYGVPADSTDEYIKIGEST 162

Query: 72  SLECLDRFTRGVIEVFGGEYLRRPTSSDVERLLQVNESRGF 112
           +LE L RF R ++EVF   YLR P ++DV RLL + ESRGF
Sbjct: 163 ALESLKRFCRAIVEVFACCYLRSPDANDVARLLHIGESRGF 203



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.139    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,139,512
Number of extensions: 350219
Number of successful extensions: 911
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 914
Number of HSP's successfully gapped: 2
Length of query: 358
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 258
Effective length of database: 8,364,969
Effective search space: 2158162002
Effective search space used: 2158162002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 112 (47.8 bits)