Os01g0869500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Plant nuclear matrix 1 family protein.
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Os01g0869500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Plant nuclear matrix 1 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.54 | 0.28 | 9.22 | -0.649 | 1.34 | -1.21 | 0.186 | -0.65 | -0.102 | 4.3 | 24.1 | 10 | -- | -- |
| 36.07 | 0.282 | 9.23 | -0.734 | 1.34 | -1.14 | 0.00707 | -- | -0.119 | 4.31 | 24.1 | 10 | -- | -- |
| 35.5 | 0.28 | 9.22 | -0.658 | 1.34 | -1.21 | -- | -0.593 | -0.101 | 4.3 | 23.94 | 8 | -- | -- |
| 36.05 | 0.281 | 9.23 | -0.734 | 1.34 | -1.14 | -- | -- | -0.12 | 4.31 | 24.1 | 10 | -- | -- |
| 127.75 | 0.529 | 9.21 | -0.545 | -- | -0.642 | -- | -0.158 | 0.0055 | -- | 23.94 | 8 | -- | -- |
| 54.66 | 0.347 | 9.18 | -0.475 | 1.22 | -- | 0.0312 | -- | 0.0674 | 4.79 | -- | -- | -- | -- |
| 54.66 | 0.346 | 9.18 | -0.475 | 1.22 | -- | -- | -- | 0.0673 | 4.79 | -- | -- | -- | -- |
| 127.49 | 0.528 | 9.22 | -0.565 | -- | -0.678 | -- | -- | 0.00866 | -- | 23.2 | 7 | -- | -- |
| 49.02 | 0.328 | 9.2 | -- | 1.29 | -0.866 | -- | -- | 0.0029 | 4.44 | 24 | 6 | -- | -- |
| 134.01 | 0.541 | 9.2 | -0.429 | -- | -- | -- | -- | 0.0991 | -- | -- | -- | -- | -- |
| 60.61 | 0.364 | 9.17 | -- | 1.22 | -- | -- | -- | 0.12 | 4.8 | -- | -- | -- | -- |
| 134.61 | 0.54 | 9.19 | -- | -- | -1.33 | -- | -- | 0.135 | -- | 15.48 | 275 | -- | -- |
| 138.87 | 0.55 | 9.18 | -- | -- | -- | -- | -- | 0.147 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 31.09 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 12 |
| 2 | 31.28 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 10 |
| 5 | 31.58 | temperature | 25 | 10 | < th | dose dependent | sin | 16 | NA |
| 8 | 31.63 | temperature | 10 | 10 | > th | dose dependent | sin | 14 | NA |
| 10 | 31.69 | temperature | 30 | 10 | < th | dose dependent | sin | 14 | NA |
| 40 | 32.44 | temperature | 15 | 270 | > th | dose dependent | rect. | 15 | 14 |
| 48 | 32.55 | temperature | 30 | 10 | < th | dose dependent | rect. | 16 | 11 |
| 54 | 32.67 | temperature | 15 | 720 | > th | dose dependent | rect. | 16 | 6 |
| 75 | 32.95 | temperature | 30 | 10 | < th | dose dependent | rect. | 14 | 13 |
| 99 | 33.20 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 14 |
| 124 | 33.49 | temperature | 10 | 720 | > th | dose dependent | rect. | 10 | 12 |
| 155 | 33.68 | temperature | 25 | 10 | < th | dose dependent | rect. | 8 | 18 |
| 167 | 33.72 | temperature | 10 | 720 | > th | dose dependent | sin | 18 | NA |
| 335 | 34.58 | temperature | 25 | 10 | < th | dose dependent | rect. | 6 | 20 |
| 468 | 35.17 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 3 |
| 739 | 36.17 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 773 | 36.25 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 23 |
| 831 | 36.38 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 839 | 36.41 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 842 | 36.41 | temperature | 15 | 10 | > th | dose dependent | rect. | 17 | 14 |
| 846 | 36.41 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 853 | 36.43 | temperature | 25 | 10 | < th | dose dependent | rect. | 11 | 23 |
| 873 | 36.49 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 889 | 36.54 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 926 | 36.64 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |