BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0869500 Os01g0869500|AK106718
         (331 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0869500  Plant nuclear matrix 1 family protein               681   0.0  

>Os01g0869500 Plant nuclear matrix 1 family protein
          Length = 331

 Score =  681 bits (1758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 331/331 (100%), Positives = 331/331 (100%)

Query: 1   MASKQMEEIQRKLAVLAYPRANAPAQSLLFAGVERYRLLEWLFFRLLGDRSPFTQQNWQG 60
           MASKQMEEIQRKLAVLAYPRANAPAQSLLFAGVERYRLLEWLFFRLLGDRSPFTQQNWQG
Sbjct: 1   MASKQMEEIQRKLAVLAYPRANAPAQSLLFAGVERYRLLEWLFFRLLGDRSPFTQQNWQG 60

Query: 61  DSLDRDEENSRIQHLAEIANFLGITPSVDTEAIQGRGSYDERVELLCLIVDLVEASCYAD 120
           DSLDRDEENSRIQHLAEIANFLGITPSVDTEAIQGRGSYDERVELLCLIVDLVEASCYAD
Sbjct: 61  DSLDRDEENSRIQHLAEIANFLGITPSVDTEAIQGRGSYDERVELLCLIVDLVEASCYAD 120

Query: 121 NPEWSVDEQLAKDVLLVDSIAEKQAQIFSEECKLFPADVQIQSIYPLPDITELELKLSEY 180
           NPEWSVDEQLAKDVLLVDSIAEKQAQIFSEECKLFPADVQIQSIYPLPDITELELKLSEY
Sbjct: 121 NPEWSVDEQLAKDVLLVDSIAEKQAQIFSEECKLFPADVQIQSIYPLPDITELELKLSEY 180

Query: 181 TKKMSNLQLMVQELASKYDYNPNEDYAETELKLREHLQSFLETVKSFNMIYTKEIHPWTH 240
           TKKMSNLQLMVQELASKYDYNPNEDYAETELKLREHLQSFLETVKSFNMIYTKEIHPWTH
Sbjct: 181 TKKMSNLQLMVQELASKYDYNPNEDYAETELKLREHLQSFLETVKSFNMIYTKEIHPWTH 240

Query: 241 MMEVPQLHGFGPAANRLLEAYNTLLKFLSNLRSLRDSYAAMAAGSLSASNEPSSVTKIIS 300
           MMEVPQLHGFGPAANRLLEAYNTLLKFLSNLRSLRDSYAAMAAGSLSASNEPSSVTKIIS
Sbjct: 241 MMEVPQLHGFGPAANRLLEAYNTLLKFLSNLRSLRDSYAAMAAGSLSASNEPSSVTKIIS 300

Query: 301 DCESALTFLNNSLSILSTSVAREQGETLNSQ 331
           DCESALTFLNNSLSILSTSVAREQGETLNSQ
Sbjct: 301 DCESALTFLNNSLSILSTSVAREQGETLNSQ 331



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.130    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,834,315
Number of extensions: 379204
Number of successful extensions: 1049
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1049
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 230
Effective length of database: 11,762,187
Effective search space: 2705303010
Effective search space used: 2705303010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)