BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0869500 Os01g0869500|AK106718
         (331 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G17620.1  | chr5:5805934-5808455 REVERSE LENGTH=330            499   e-141

>AT5G17620.1 | chr5:5805934-5808455 REVERSE LENGTH=330
          Length = 329

 Score =  499 bits (1284), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 236/329 (71%), Positives = 284/329 (86%), Gaps = 1/329 (0%)

Query: 1   MASKQMEEIQRKLAVLAYPRANAPAQSLLFAGVERYRLLEWLFFRLLGDRSPFTQQNWQG 60
           MA+KQMEEIQ+KL +L+YPRANAPAQSLLFAG+ERY LLEWLFF+LLGD+SPF+QQN QG
Sbjct: 1   MAAKQMEEIQKKLRLLSYPRANAPAQSLLFAGMERYALLEWLFFKLLGDKSPFSQQNLQG 60

Query: 61  DSLDRDEENSRIQHLAEIANFLGITPSVDTEAIQGRGSYDERVELLCLIVDLVEASCYAD 120
           D+  RDEE  RIQ+LAEIA FLGITP+VD EAIQG G+Y++R+E+L  IVDLVEAS ++D
Sbjct: 61  DAGVRDEETVRIQYLAEIAKFLGITPTVDIEAIQGHGTYEDRMEMLRNIVDLVEASLFSD 120

Query: 121 NPEWSVDEQLAKDVLLVDSIAEKQAQIFSEECKLFPADVQIQSIYPLPDITELELKLSEY 180
           N EWS+DEQ+AKD+ L+D+IAE+Q+ IFSEECKLFPADVQIQSIYPLPD++ELE KLSE 
Sbjct: 121 NQEWSIDEQVAKDIQLIDAIAERQSLIFSEECKLFPADVQIQSIYPLPDVSELETKLSEQ 180

Query: 181 TKKMSNLQLMVQELASKYDYNPNEDYAETELKLREHLQSFLETVKSFNMIYTKEIHPWTH 240
            K +SNLQ  V +LA+K+ YNP+E+Y E E +LR  L+SFLET ++FN IYTKEI PWTH
Sbjct: 181 AKILSNLQQKVDDLAAKHAYNPDEEYTEVESQLRARLESFLETARAFNTIYTKEIRPWTH 240

Query: 241 MMEVPQLHGFGPAANRLLEAYNTLLKFLSNLRSLRDSYAAMAAGSL-SASNEPSSVTKII 299
           MMEVPQLHGFGPAANRLLEAYN LLKFL NL++LRDS+AA++ GS  + + EPSSVT+I+
Sbjct: 241 MMEVPQLHGFGPAANRLLEAYNMLLKFLGNLKNLRDSHAALSIGSSGTVAGEPSSVTRIV 300

Query: 300 SDCESALTFLNNSLSILSTSVAREQGETL 328
           SDCE+ALT LN  L ILS S+AREQGE L
Sbjct: 301 SDCEAALTVLNRDLGILSASIAREQGERL 329



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.130    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,594,804
Number of extensions: 262867
Number of successful extensions: 790
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 789
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 232
Effective length of database: 8,392,385
Effective search space: 1947033320
Effective search space used: 1947033320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)