Os01g0857900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WD-40 repeat containing protein.
FiT-DB / Search/ Help/ Sample detail
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Os01g0857900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WD-40 repeat containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 100.29 | 0.471 | 8.68 | -2.1 | 0.594 | 0.623 | -0.251 | 4.7 | 0.442 | 6.93 | 29.5 | 278 | -- | -- |
| 105.52 | 0.478 | 8.63 | -1.71 | 0.628 | 1.04 | 0.00699 | -- | 0.464 | 6.82 | 29.89 | 228 | -- | -- |
| 100.43 | 0.467 | 8.67 | -2.09 | 0.598 | 0.626 | -- | 4.52 | 0.447 | 6.92 | 29.5 | 274 | -- | -- |
| 105.14 | 0.478 | 8.63 | -1.61 | 0.593 | 1.13 | -- | -- | 0.483 | 6.93 | 29.9 | 275 | -- | -- |
| 111.76 | 0.492 | 8.67 | -2.09 | -- | 0.999 | -- | 3.96 | 0.51 | -- | 28.83 | 406 | -- | -- |
| 133.11 | 0.541 | 8.61 | -1.79 | 0.973 | -- | 0.869 | -- | 0.53 | 6.17 | -- | -- | -- | -- |
| 134.94 | 0.544 | 8.61 | -1.78 | 0.977 | -- | -- | -- | 0.528 | 6.25 | -- | -- | -- | -- |
| 117.9 | 0.506 | 8.63 | -1.55 | -- | 1.44 | -- | -- | 0.556 | -- | 29.5 | 406 | -- | -- |
| 171.31 | 0.61 | 8.59 | -- | 0.47 | 1.38 | -- | -- | 0.654 | 7.44 | 29.7 | 299 | -- | -- |
| 184.45 | 0.635 | 8.63 | -1.75 | -- | -- | -- | -- | 0.549 | -- | -- | -- | -- | -- |
| 218.28 | 0.691 | 8.57 | -- | 0.952 | -- | -- | -- | 0.726 | 6.34 | -- | -- | -- | -- |
| 180.17 | 0.625 | 8.6 | -- | -- | 1.66 | -- | -- | 0.692 | -- | 29.6 | 412 | -- | -- |
| 265.39 | 0.76 | 8.59 | -- | -- | -- | -- | -- | 0.743 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 98.85 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 6 |
| 2 | 98.85 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 19 | 8 |
| 4 | 98.97 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 24 | 14 |
| 7 | 99.03 | temperature | 25.0 | 720 | > th | dose dependent | sin | 6 | NA |
| 16 | 99.32 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 22 | 99.47 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 6 |
| 27 | 99.55 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 19 | 8 |
| 40 | 99.74 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 10 | 1 |
| 49 | 99.86 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 58 | 99.96 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 9 | 2 |
| 70 | 100.11 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 6 | 2 |
| 159 | 100.65 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 163 | 100.66 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 165 | 100.66 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 8 | 14 |
| 167 | 100.68 | temperature | 15.0 | 14400 | > th | dose dependent | rect. | 8 | 14 |
| 173 | 100.71 | temperature | 15.0 | 14400 | > th | dose dependent | rect. | 8 | 12 |
| 209 | 100.78 | temperature | 20.0 | 14400 | > th | dose independent | sin | 14 | NA |
| 272 | 100.91 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 287 | 100.93 | temperature | 15.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 288 | 100.93 | temperature | 15.0 | 14400 | > th | dose dependent | rect. | 19 | 1 |
| 312 | 100.97 | temperature | 15.0 | 14400 | > th | dose dependent | sin | 22 | NA |
| 313 | 100.97 | temperature | 30.0 | 14400 | < th | dose dependent | sin | 22 | NA |
| 354 | 101.03 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 19 | 1 |
| 410 | 101.11 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 5 |
| 442 | 101.16 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 8 |
| 451 | 101.18 | wind | 5.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 452 | 101.18 | wind | 5.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 482 | 101.23 | temperature | 15.0 | 14400 | > th | dose dependent | rect. | 17 | 5 |
| 498 | 101.24 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 17 | 3 |
| 549 | 101.31 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 17 | 5 |
| 748 | 101.51 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 766 | 101.53 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 9 |
| 782 | 101.54 | temperature | 15.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 819 | 101.58 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 4 | 12 |
| 879 | 101.65 | temperature | 20.0 | 14400 | < th | dose independent | sin | 13 | NA |
| 883 | 101.65 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 11 | 2 |
| 956 | 101.71 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 8 | 8 |