BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0857900 Os01g0857900|AK111811
         (161 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0857900  WD-40 repeat containing protein                     335   1e-92
Os02g0307200  Conserved hypothetical protein                      107   3e-24

>Os01g0857900 WD-40 repeat containing protein
          Length = 161

 Score =  335 bits (858), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 161/161 (100%), Positives = 161/161 (100%)

Query: 1   MAVWYPVDTGLFVTASFDQYVKVWDTNSTQVVMDFKMPGKVYSAAMSPIATTHMLIATGS 60
           MAVWYPVDTGLFVTASFDQYVKVWDTNSTQVVMDFKMPGKVYSAAMSPIATTHMLIATGS
Sbjct: 1   MAVWYPVDTGLFVTASFDQYVKVWDTNSTQVVMDFKMPGKVYSAAMSPIATTHMLIATGS 60

Query: 61  ADVQVHLCDIASGAFTHTLSGHRDGIMSLEWSTSSEWILMSGGCDGAIRFWDIRRAGCFL 120
           ADVQVHLCDIASGAFTHTLSGHRDGIMSLEWSTSSEWILMSGGCDGAIRFWDIRRAGCFL
Sbjct: 61  ADVQVHLCDIASGAFTHTLSGHRDGIMSLEWSTSSEWILMSGGCDGAIRFWDIRRAGCFL 120

Query: 121 VLDQSRSQLGRRPPFLEGTSDKIWSPLSITYICFQNIWLQC 161
           VLDQSRSQLGRRPPFLEGTSDKIWSPLSITYICFQNIWLQC
Sbjct: 121 VLDQSRSQLGRRPPFLEGTSDKIWSPLSITYICFQNIWLQC 161



>Os02g0307200 Conserved hypothetical protein
          Length = 54

 Score =  107 bits (268), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/53 (98%), Positives = 52/53 (98%)

Query: 31 VVMDFKMPGKVYSAAMSPIATTHMLIATGSADVQVHLCDIASGAFTHTLSGHR 83
          VVMDFKMPGKVYSAAMSPIATTHMLIATGSADVQV LCDIASGAFTHTLSGHR
Sbjct: 1  VVMDFKMPGKVYSAAMSPIATTHMLIATGSADVQVRLCDIASGAFTHTLSGHR 53



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.324    0.135    0.450 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 5,873,240
Number of extensions: 220267
Number of successful extensions: 1105
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1154
Number of HSP's successfully gapped: 2
Length of query: 161
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 68
Effective length of database: 12,179,899
Effective search space: 828233132
Effective search space used: 828233132
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 152 (63.2 bits)