Os01g0856900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Glycoside hydrolase, starch-binding domain containing protein.
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Os01g0856900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Glycoside hydrolase, starch-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 88.9 | 0.443 | 12 | -0.605 | 2.24 | -1.01 | 0.912 | -2 | 0.0992 | 6.35 | 37.57 | 332 | -- | -- |
| 91.57 | 0.446 | 12 | -0.587 | 2.17 | -0.939 | 1.2 | -- | 0.117 | 6.31 | 37.01 | 390 | -- | -- |
| 89.96 | 0.442 | 12 | -0.592 | 2.17 | -0.992 | -- | -1.9 | 0.107 | 6.29 | 37.11 | 376 | -- | -- |
| 95.05 | 0.454 | 12 | -0.568 | 2.18 | -0.926 | -- | -- | 0.111 | 6.31 | 37.01 | 390 | -- | -- |
| 113.22 | 0.496 | 12 | -0.102 | -- | -3.12 | -- | -2.16 | 0.265 | -- | 2.03 | 726 | -- | -- |
| 103.96 | 0.478 | 12 | -0.584 | 2.51 | -- | 1.32 | -- | 0.0321 | 5.98 | -- | -- | -- | -- |
| 108.24 | 0.487 | 12 | -0.573 | 2.52 | -- | -- | -- | 0.0271 | 5.98 | -- | -- | -- | -- |
| 113.09 | 0.495 | 12 | -0.377 | -- | -3.09 | -- | -- | 0.216 | -- | 2.17 | 718 | -- | -- |
| 102.23 | 0.471 | 12 | -- | 2.18 | -0.949 | -- | -- | 0.186 | 6.3 | 35 | 429 | -- | -- |
| 436.93 | 0.977 | 12.1 | -0.499 | -- | -- | -- | -- | 0.0846 | -- | -- | -- | -- | -- |
| 116.88 | 0.506 | 12 | -- | 2.51 | -- | -- | -- | 0.0909 | 5.99 | -- | -- | -- | -- |
| 117.8 | 0.506 | 12 | -- | -- | -3.12 | -- | -- | 0.25 | -- | 2.17 | 724 | -- | -- |
| 443.49 | 0.983 | 12 | -- | -- | -- | -- | -- | 0.14 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 82.78 | temperature | 25 | 270 | > th | dose dependent | sin | 6 | NA |
| 4 | 84.01 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 5 | 84.33 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 7 |
| 18 | 84.90 | temperature | 25 | 270 | > th | dose dependent | rect. | 7 | 4 |
| 20 | 84.92 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 2 |
| 37 | 85.31 | radiation | 30 | 270 | > th | dose dependent | rect. | 14 | 21 |
| 54 | 85.63 | radiation | 40 | 270 | > th | dose independent | rect. | 14 | 21 |
| 65 | 85.88 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 7 |
| 68 | 85.93 | radiation | 40 | 270 | > th | dose independent | sin | 12 | NA |
| 83 | 86.42 | radiation | 30 | 270 | > th | dose dependent | sin | 12 | NA |
| 98 | 86.66 | radiation | 30 | 720 | > th | dose dependent | rect. | 9 | 1 |
| 103 | 86.70 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 106 | 86.75 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 107 | 86.76 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 4 |
| 111 | 86.78 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 6 |
| 115 | 86.85 | radiation | 40 | 720 | > th | dose independent | rect. | 9 | 1 |
| 117 | 86.85 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 8 |
| 177 | 87.13 | temperature | 25 | 720 | < th | dose independent | rect. | 9 | 2 |
| 202 | 87.22 | radiation | 40 | 270 | < th | dose independent | sin | 8 | NA |
| 211 | 87.31 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 4 |
| 240 | 87.53 | radiation | 40 | 270 | < th | dose independent | rect. | 8 | 23 |
| 254 | 87.71 | temperature | 30 | 90 | < th | dose independent | rect. | 3 | 12 |
| 314 | 88.16 | radiation | 40 | 720 | < th | dose dependent | rect. | 1 | 11 |
| 335 | 88.30 | radiation | 40 | 720 | < th | dose dependent | rect. | 17 | 19 |
| 357 | 88.46 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 13 |
| 364 | 88.52 | temperature | 25 | 720 | < th | dose dependent | rect. | 7 | 8 |
| 403 | 88.71 | temperature | 30 | 90 | > th | dose independent | sin | 5 | NA |
| 433 | 88.80 | temperature | 25 | 720 | > th | dose independent | sin | 4 | NA |
| 460 | 88.85 | radiation | 40 | 720 | < th | dose dependent | rect. | 9 | 3 |
| 481 | 88.96 | radiation | 1 | 720 | > th | dose dependent | rect. | 4 | 6 |
| 497 | 88.99 | temperature | 30 | 90 | > th | dose independent | rect. | 8 | 7 |
| 520 | 89.04 | temperature | 25 | 90 | > th | dose dependent | rect. | 18 | 23 |
| 531 | 89.10 | radiation | 40 | 720 | < th | dose independent | rect. | 17 | 19 |
| 564 | 89.25 | radiation | 40 | 720 | < th | dose independent | rect. | 9 | 4 |
| 583 | 89.30 | radiation | 40 | 270 | < th | dose independent | rect. | 17 | 23 |
| 589 | 89.33 | temperature | 30 | 270 | < th | dose independent | rect. | 1 | 12 |
| 606 | 89.41 | radiation | 40 | 720 | < th | dose independent | rect. | 2 | 10 |
| 671 | 89.54 | radiation | 20 | 720 | < th | dose independent | rect. | 17 | 19 |
| 822 | 89.95 | radiation | 40 | 270 | < th | dose independent | rect. | 1 | 13 |
| 841 | 89.99 | temperature | 25 | 30 | > th | dose dependent | rect. | 9 | 11 |
| 850 | 90.05 | radiation | 1 | 720 | > th | dose dependent | sin | 9 | NA |
| 879 | 90.09 | radiation | 20 | 720 | < th | dose independent | rect. | 1 | 11 |
| 897 | 90.14 | radiation | 40 | 720 | < th | dose dependent | rect. | 23 | 13 |
| 923 | 90.17 | wind | 3 | 14400 | > th | dose dependent | rect. | 15 | 2 |
| 980 | 90.22 | temperature | 25 | 30 | > th | dose dependent | rect. | 9 | 16 |