BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0856900 Os01g0856900|AK107570
         (379 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G01260.2  | chr5:105367-107045 FORWARD LENGTH=386              114   6e-26
AT5G26570.1  | chr5:9261580-9267526 FORWARD LENGTH=1197            58   7e-09

>AT5G01260.2 | chr5:105367-107045 FORWARD LENGTH=386
          Length = 385

 Score =  114 bits (286), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 60/142 (42%), Positives = 83/142 (58%), Gaps = 12/142 (8%)

Query: 87  LKPSHCVDHSVQVDADEETGSTKTLPPPDDVPTKTVHVKFVLQKRCAFGQRFLVVGDVAA 146
           L+ S   D  V V+ DEE  ++           KTV V+F L+K C FG+ F +VGD   
Sbjct: 63  LRSSSIKDSQVNVE-DEEIEAS----------NKTVRVRFQLRKECVFGEHFFIVGDDPV 111

Query: 147 LG-LWNPAKAAALDWSEDHVWTVKKELPAERSIEFKFLLQDRSGHVEWQHGRNRILHVAD 205
            G LW+P  A  L+WS+ +VWTV  +LP  R +EFK LL+ ++G + WQ G NR L   +
Sbjct: 112 FGGLWDPETALPLNWSDGNVWTVDLDLPVGRLVEFKLLLKAQTGEILWQPGPNRALETWE 171

Query: 206 TSNTLIVCEDWDEAKNQQVSEE 227
           T+ T+ +CEDWD A  Q + EE
Sbjct: 172 TNKTIRICEDWDNADLQMMIEE 193



>AT5G26570.1 | chr5:9261580-9267526 FORWARD LENGTH=1197
          Length = 1196

 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 4/99 (4%)

Query: 122 VHVKFVLQKRCAFGQRFLVVGDVAALGLWNPAKAAALDWSEDHVWTVKKELPAERSIEFK 181
           V +   L  +  FG    + G    +G W   K + L+WSE+  W  + EL   + +E+K
Sbjct: 74  VRLNVRLDHQVNFGDHVAMFGSAKEIGSWK--KKSPLNWSENG-WVCELELDGGQVLEYK 130

Query: 182 FLLQDRSGHVEWQHGRNRILHVADTSNTLIVCEDWDEAK 220
           F++    G + W+ G NR+L V ++ N  +VC  WD  +
Sbjct: 131 FVIVKNDGSLSWESGDNRVLKVPNSGNFSVVCH-WDATR 168



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.131    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,860,219
Number of extensions: 264113
Number of successful extensions: 611
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 610
Number of HSP's successfully gapped: 2
Length of query: 379
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 279
Effective length of database: 8,364,969
Effective search space: 2333826351
Effective search space used: 2333826351
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)