Os01g0819900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase domain containing protein.
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Os01g0819900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.99 | 0.228 | 9.04 | -1.71 | 1.29 | 87.3 | -0.552 | 183 | 0.0742 | 5.39 | 15 | 90 | -- | -- |
| 24.91 | 0.234 | 9.79 | -0.169 | 1.28 | 0.764 | -0.529 | -- | 0.066 | 5.44 | 15 | 90 | -- | -- |
| 24.74 | 0.232 | 9.04 | -1.72 | 1.28 | 87.3 | -- | 183 | 0.0766 | 5.39 | 15 | 90 | -- | -- |
| 25.6 | 0.237 | 9.79 | -0.17 | 1.28 | 0.746 | -- | -- | 0.0685 | 5.43 | 15 | 90 | -- | -- |
| 110.42 | 0.489 | 9.06 | -1.65 | -- | 87.5 | -- | 183 | 0.108 | -- | 15.07 | 85 | -- | -- |
| 26.03 | 0.239 | 9.79 | -0.139 | 1.28 | -- | -0.51 | -- | 0.0738 | 5.48 | -- | -- | -- | -- |
| 26.68 | 0.242 | 9.79 | -0.141 | 1.28 | -- | -- | -- | 0.076 | 5.46 | -- | -- | -- | -- |
| 110.93 | 0.493 | 9.81 | -0.123 | -- | 0.642 | -- | -- | 0.101 | -- | 14.57 | 220 | -- | -- |
| 26.35 | 0.24 | 9.79 | -- | 1.28 | 0.659 | -- | -- | 0.0879 | 5.44 | 15 | 90 | -- | -- |
| 111.73 | 0.494 | 9.81 | -0.0987 | -- | -- | -- | -- | 0.107 | -- | -- | -- | -- | -- |
| 27.2 | 0.244 | 9.79 | -- | 1.28 | -- | -- | -- | 0.0917 | 5.47 | -- | -- | -- | -- |
| 111.32 | 0.493 | 9.8 | -- | -- | 0.58 | -- | -- | 0.115 | -- | 14.45 | 318 | -- | -- |
| 111.99 | 0.494 | 9.8 | -- | -- | -- | -- | -- | 0.118 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.47 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 16 |
| 2 | 23.47 | radiation | 1 | 720 | < th | dose independent | rect. | 18 | 18 |
| 6 | 23.53 | radiation | 1 | 720 | < th | dose dependent | rect. | 18 | 18 |
| 12 | 23.59 | radiation | 1 | 720 | > th | dose independent | rect. | 5 | 5 |
| 28 | 23.66 | radiation | 1 | 720 | < th | dose dependent | sin | 10 | NA |
| 30 | 23.68 | radiation | 1 | 720 | < th | dose independent | rect. | 1 | 11 |
| 32 | 23.68 | atmosphere | 1015 | 10 | < th | dose dependent | rect. | 19 | 13 |
| 35 | 23.69 | radiation | 1 | 720 | < th | dose dependent | rect. | 2 | 10 |
| 39 | 23.71 | radiation | 1 | 720 | < th | dose independent | sin | 10 | NA |
| 46 | 23.74 | radiation | 1 | 720 | > th | dose independent | sin | 10 | NA |
| 50 | 23.74 | atmosphere | 1015 | 1440 | > th | dose dependent | rect. | 24 | 3 |
| 64 | 23.77 | radiation | 1 | 720 | > th | dose independent | sin | 5 | NA |
| 91 | 23.82 | radiation | 1 | 720 | < th | dose dependent | sin | 5 | NA |
| 94 | 23.83 | radiation | 1 | 720 | < th | dose independent | sin | 5 | NA |
| 95 | 23.83 | atmosphere | 1015 | 1440 | > th | dose independent | rect. | 24 | 4 |
| 120 | 23.87 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 15 | 12 |
| 128 | 23.89 | temperature | 15 | 720 | > th | dose independent | rect. | 17 | 5 |
| 131 | 23.89 | radiation | 1 | 720 | > th | dose independent | rect. | 18 | 23 |
| 143 | 23.92 | atmosphere | 1010 | 10 | < th | dose independent | rect. | 19 | 13 |
| 146 | 23.93 | temperature | 15 | 1440 | < th | dose dependent | sin | 22 | NA |
| 148 | 23.94 | temperature | 15 | 1440 | < th | dose independent | sin | 22 | NA |
| 156 | 23.95 | atmosphere | 995 | 10 | > th | dose dependent | rect. | 16 | 11 |
| 157 | 23.95 | temperature | 15 | 720 | < th | dose dependent | rect. | 4 | 18 |
| 163 | 23.96 | temperature | 15 | 1440 | < th | dose independent | rect. | 5 | 19 |
| 167 | 23.96 | temperature | 15 | 720 | < th | dose dependent | rect. | 4 | 16 |
| 177 | 23.97 | radiation | 1 | 720 | > th | dose independent | rect. | 5 | 12 |
| 196 | 23.97 | temperature | 20 | 720 | < th | dose dependent | rect. | 12 | 1 |
| 206 | 23.99 | temperature | 15 | 90 | > th | dose independent | no | NA | NA |
| 208 | 23.99 | temperature | 15 | 90 | < th | dose independent | sin | 7 | NA |
| 256 | 23.99 | temperature | 15 | 90 | < th | dose independent | no | NA | NA |
| 258 | 23.99 | temperature | 15 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 260 | 23.99 | temperature | 15 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 263 | 23.99 | atmosphere | 1015 | 1440 | > th | dose independent | rect. | 1 | 1 |
| 395 | 23.99 | temperature | 15 | 270 | < th | dose independent | rect. | 24 | 10 |
| 440 | 23.99 | temperature | 15 | 270 | > th | dose independent | rect. | 17 | 13 |
| 848 | 23.99 | temperature | 15 | 90 | < th | dose dependent | sin | 7 | NA |
| 896 | 23.99 | temperature | 15 | 90 | < th | dose dependent | no | NA | NA |
| 898 | 23.99 | temperature | 15 | 1440 | < th | dose dependent | rect. | 5 | 1 |
| 900 | 23.99 | temperature | 15 | 1440 | < th | dose dependent | rect. | 9 | 1 |