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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0813500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Vacuolar protein sorting 36 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.97 (0.0168) R2 : 0.383
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.604 (0.0441) R2dC : 0.255 R2C : 0.228
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.334 (0.0354) R2dN8 : 0.155 R2N8 : 0.128
σ : 0.318
deviance : 46.11
__
_____
C
peak time of C : 5.55
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
30.02 0.257 9 -0.519 0.62 -1.05 0.135 -1.01 0.14 5.79 23.27 2050 -- --
31.13 0.26 9.02 -0.667 0.625 -0.847 0.0851 -- 0.0963 5.8 24.9 2043 -- --
30.06 0.255 9 -0.519 0.621 -1.05 -- -0.997 0.139 5.78 23.29 2042 -- --
31.14 0.26 9.03 -0.67 0.625 -0.848 -- -- 0.0928 5.81 24.9 2048 -- --
47.76 0.322 9.02 -0.474 -- -1.07 -- -0.917 0.133 -- 25.1 1337 -- --
42.67 0.306 8.98 -0.361 0.609 -- 0.0612 -- 0.294 5.52 -- -- -- --
42.68 0.306 8.98 -0.361 0.609 -- -- -- 0.293 5.53 -- -- -- --
48.51 0.324 9.04 -0.714 -- -0.883 -- -- 0.085 -- 25.4 2719 -- --
40.54 0.297 9 -- 0.588 -0.583 -- -- 0.218 5.58 25.2 1486 -- --
61.99 0.368 8.99 -0.341 -- -- -- -- 0.308 -- -- -- -- --
46.11 0.318 8.97 -- 0.604 -- -- -- 0.334 5.55 -- -- -- --
57.72 0.354 9.01 -- -- -0.665 -- -- 0.222 -- 25.7 1276 -- --
65.06 0.376 8.98 -- -- -- -- -- 0.346 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 27.44 wind 3 43200 < th dose dependent rect. 22 4
2 27.52 wind 3 14400 < th dose dependent rect. 22 1
20 28.65 wind 1 14400 < th dose independent rect. 21 5
21 28.72 wind 1 14400 < th dose independent rect. 21 2
24 28.72 wind 3 14400 < th dose dependent rect. 20 18
28 28.79 wind 1 14400 > th dose independent rect. 21 5
29 28.80 humidity 90 14400 < th dose dependent rect. 2 2
34 28.84 wind 1 14400 < th dose dependent rect. 19 12
82 29.11 wind 3 14400 < th dose dependent rect. 1 1
96 29.18 wind 1 14400 < th dose dependent sin 11 NA
143 29.32 wind 1 14400 > th dose independent rect. 22 1
146 29.32 wind 3 14400 < th dose dependent rect. 4 10
152 29.33 wind 3 43200 < th dose dependent rect. 12 1
160 29.35 atmosphere 1015 43200 < th dose independent rect. 19 3
162 29.35 wind 3 14400 < th dose dependent rect. 5 8
181 29.41 humidity 70 14400 > th dose dependent rect. 5 1
189 29.42 humidity 50 43200 < th dose dependent rect. 13 1
203 29.45 wind 3 14400 < th dose dependent rect. 5 3
206 29.46 atmosphere 1015 43200 > th dose independent rect. 21 1
209 29.46 wind 3 14400 < th dose dependent sin 5 NA
216 29.47 wind 3 14400 < th dose independent rect. 17 15
219 29.48 wind 3 43200 < th dose independent rect. 1 1
221 29.48 atmosphere 1015 43200 > th dose independent rect. 19 4
237 29.51 wind 1 43200 < th dose independent rect. 12 1
244 29.52 wind 3 43200 > th dose independent rect. 1 1
281 29.57 wind 3 14400 > th dose independent rect. 17 15
293 29.59 wind 3 14400 < th dose dependent rect. 5 1
295 29.59 wind 3 14400 < th dose dependent rect. 12 20
336 29.67 wind 3 14400 < th dose independent rect. 21 18
347 29.69 wind 1 43200 > th dose independent rect. 11 2
352 29.70 humidity 50 43200 < th dose independent rect. 13 1
371 29.72 wind 1 14400 > th dose independent rect. 20 17
416 29.77 radiation 40 43200 < th dose independent rect. 11 3
430 29.78 atmosphere 1015 43200 > th dose independent rect. 12 12
436 29.79 radiation 40 43200 < th dose independent rect. 13 1
459 29.83 humidity 50 43200 < th dose independent rect. 11 3
460 29.83 wind 1 14400 > th dose independent rect. 21 12
494 29.88 wind 3 14400 < th dose independent sin 12 NA
498 29.88 wind 1 14400 < th dose independent rect. 21 12
507 29.88 temperature 25 270 < th dose dependent rect. 6 22
508 29.89 atmosphere 1015 43200 < th dose independent sin 16 NA
538 29.91 humidity 50 43200 > th dose independent rect. 13 1
565 29.92 wind 1 14400 < th dose dependent rect. 4 22
606 29.96 humidity 50 43200 < th dose independent rect. 19 19
608 29.96 radiation 30 43200 > th dose dependent rect. 11 3
610 29.97 radiation 40 43200 > th dose independent rect. 11 3
616 29.97 wind 3 14400 < th dose dependent no NA NA
670 30.00 radiation 30 43200 > th dose dependent rect. 13 1
687 30.02 wind 3 14400 > th dose independent sin 12 NA
697 30.02 humidity 50 43200 > th dose independent rect. 19 19
723 30.05 humidity 50 43200 < th dose independent rect. 3 11
772 30.08 humidity 80 14400 > th dose independent rect. 6 1
782 30.09 wind 3 14400 < th dose independent sin 5 NA
792 30.09 wind 1 14400 < th dose dependent rect. 4 20
808 30.11 atmosphere 1015 43200 > th dose independent sin 16 NA
810 30.11 atmosphere 1015 43200 > th dose independent rect. 12 1
834 30.12 wind 3 14400 < th dose independent rect. 1 13
847 30.13 atmosphere 1015 43200 < th dose independent rect. 13 1
865 30.13 humidity 50 14400 > th dose dependent rect. 1 5
869 30.14 radiation 10 43200 < th dose independent rect. 16 1
877 30.14 humidity 50 43200 > th dose independent rect. 3 11
932 30.15 temperature 30 1440 < th dose dependent rect. 23 7
934 30.15 humidity 50 43200 < th dose dependent rect. 19 20
942 30.16 humidity 80 43200 > th dose independent rect. 17 14
996 30.17 atmosphere 1015 43200 > th dose dependent rect. 11 1
1000 30.17 humidity 50 43200 < th dose dependent rect. 5 10