BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0813500 Os01g0813500|AK073388
         (447 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G04920.1  | chr5:1439172-1441545 REVERSE LENGTH=441            436   e-122

>AT5G04920.1 | chr5:1439172-1441545 REVERSE LENGTH=441
          Length = 440

 Score =  436 bits (1121), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 235/434 (54%), Positives = 296/434 (68%), Gaps = 27/434 (6%)

Query: 18  GRPVLTAGEVERHLVAQGDVEPEESP-RLGPLRARLLVLTSHRLIFLHEPSRSARA---- 72
           GRPVL   EVE  L++  D++ E+ P R   LR+  L+LT+HRLI++  PS+S  +    
Sbjct: 23  GRPVLRRNEVECFLLSSIDIDSEDDPPRFTALRSGNLILTTHRLIWI--PSQSNESVPSS 80

Query: 73  LPLAAVVHAYPPHRKHGHNPLRSIFXXXXXXXXXHHPRVRLQISLPPSRSEVVAVVVSKG 132
           +PL+AV H Y  H+K     ++S+F         H PR+R Q    P    V  V   KG
Sbjct: 81  IPLSAVTHIYS-HKKS----IKSMF---------HSPRIRFQAD--PGSIVVTIVFRGKG 124

Query: 133 EADVFYGRLLXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXDLAIRMPVVGVSGILRM 191
           + D F  +L                                  D  +RM  VG++GILR 
Sbjct: 125 DFDGFLSKLWECWRGRAWEEEEKSESETSKSGSGTVAQGLYGNDGTVRM--VGLAGILRK 182

Query: 192 EQEAWESAGQNLQDAFQDLNALMSKAKEMMELAEKMRQKLLTNSSAQSNS-NDEEMGSKQ 250
           EQE WES  ++LQDAFQDLNALMSKAKEM+ LAEKMRQKLL+  S+Q+ S +DEEMGSK+
Sbjct: 183 EQEQWESTDKSLQDAFQDLNALMSKAKEMVSLAEKMRQKLLSAPSSQNGSTDDEEMGSKE 242

Query: 251 DMQDWLLSVGIVSPVTKETAGALYHQQLSRQLADYIRTPLEKAGGMMALVDVYCLYNRAR 310
           +MQ W+LSVGI+SPVTKE+AGALYHQ+LSRQLAD++R PLEKAGGM++L D+Y  +NRAR
Sbjct: 243 EMQQWMLSVGIISPVTKESAGALYHQELSRQLADFVRIPLEKAGGMISLTDMYYHFNRAR 302

Query: 311 GTELISPEDLLQACSLWEKFDVPVMLRKFDSGVKVIQTKTHSDDEVFARISSLAQKEDAL 370
           GTELISP+DL QAC+LWEKFDVPVMLRKFDSGV VIQ K+HSD+EV +RI  L  K + L
Sbjct: 303 GTELISPDDLWQACTLWEKFDVPVMLRKFDSGVMVIQNKSHSDEEVMSRIRMLVTKTETL 362

Query: 371 QKGISPSDAAFTLGIAPALAKEHLLNAESIGILCRDVSPDGLRFYINLFNEIDPQNMYMP 430
           + G++ SDAA TL IAPA+AKEHLL+AE+ G+LCRD+SPDGLRFY NLF EIDP N+++ 
Sbjct: 363 RVGVTASDAALTLKIAPAMAKEHLLSAETKGLLCRDMSPDGLRFYFNLFPEIDPTNLHIV 422

Query: 431 KTHGVYHTWISVTA 444
           K  G Y  WI  T+
Sbjct: 423 KEFGTYGEWIKATS 436



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.133    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,064,928
Number of extensions: 296426
Number of successful extensions: 866
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 864
Number of HSP's successfully gapped: 2
Length of query: 447
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 345
Effective length of database: 8,310,137
Effective search space: 2866997265
Effective search space used: 2866997265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)