BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0813500 Os01g0813500|AK073388
(447 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0813500 Vacuolar protein sorting 36 family protein 788 0.0
>Os01g0813500 Vacuolar protein sorting 36 family protein
Length = 447
Score = 788 bits (2035), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/430 (90%), Positives = 389/430 (90%)
Query: 18 GRPVLTAGEVERHLVAQGDVEPEESPRLGPLRARLLVLTSHRLIFLHEPSRSARALPLAA 77
GRPVLTAGEVERHLVAQGDVEPEESPRLGPLRARLLVLTSHRLIFLHEPSRSARALPLAA
Sbjct: 18 GRPVLTAGEVERHLVAQGDVEPEESPRLGPLRARLLVLTSHRLIFLHEPSRSARALPLAA 77
Query: 78 VVHAYPPHRKHGHNPLRSIFXXXXXXXXXHHPRVRLQISLPPSRSEVVAVVVSKGEADVF 137
VVHAYPPHRKHGHNPLRSIF HHPRVRLQISLPPSRSEVVAVVVSKGEADVF
Sbjct: 78 VVHAYPPHRKHGHNPLRSIFSSSSSSSSSHHPRVRLQISLPPSRSEVVAVVVSKGEADVF 137
Query: 138 YGRLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLAIRMPVVGVSGILRMEQEAWE 197
YGRLL DLAIRMPVVGVSGILRMEQEAWE
Sbjct: 138 YGRLLEAVRARAWEVVAAVAAAPAGGSSAAQGAPAEEDLAIRMPVVGVSGILRMEQEAWE 197
Query: 198 SAGQNLQDAFQDLNALMSKAKEMMELAEKMRQKLLTNSSAQSNSNDEEMGSKQDMQDWLL 257
SAGQNLQDAFQDLNALMSKAKEMMELAEKMRQKLLTNSSAQSNSNDEEMGSKQDMQDWLL
Sbjct: 198 SAGQNLQDAFQDLNALMSKAKEMMELAEKMRQKLLTNSSAQSNSNDEEMGSKQDMQDWLL 257
Query: 258 SVGIVSPVTKETAGALYHQQLSRQLADYIRTPLEKAGGMMALVDVYCLYNRARGTELISP 317
SVGIVSPVTKETAGALYHQQLSRQLADYIRTPLEKAGGMMALVDVYCLYNRARGTELISP
Sbjct: 258 SVGIVSPVTKETAGALYHQQLSRQLADYIRTPLEKAGGMMALVDVYCLYNRARGTELISP 317
Query: 318 EDLLQACSLWEKFDVPVMLRKFDSGVKVIQTKTHSDDEVFARISSLAQKEDALQKGISPS 377
EDLLQACSLWEKFDVPVMLRKFDSGVKVIQTKTHSDDEVFARISSLAQKEDALQKGISPS
Sbjct: 318 EDLLQACSLWEKFDVPVMLRKFDSGVKVIQTKTHSDDEVFARISSLAQKEDALQKGISPS 377
Query: 378 DAAFTLGIAPALAKEHLLNAESIGILCRDVSPDGLRFYINLFNEIDPQNMYMPKTHGVYH 437
DAAFTLGIAPALAKEHLLNAESIGILCRDVSPDGLRFYINLFNEIDPQNMYMPKTHGVYH
Sbjct: 378 DAAFTLGIAPALAKEHLLNAESIGILCRDVSPDGLRFYINLFNEIDPQNMYMPKTHGVYH 437
Query: 438 TWISVTAASQ 447
TWISVTAASQ
Sbjct: 438 TWISVTAASQ 447
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.133 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,931,611
Number of extensions: 480982
Number of successful extensions: 1381
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1380
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 343
Effective length of database: 11,605,545
Effective search space: 3980701935
Effective search space used: 3980701935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)