FiT-DB / Search/ Help/ Sample detail

Os01g0810100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ribonuclease III domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.8 (0.0348) R2 : 0.917
β1 : -- (--) R2dD : -- R2D : --
β2 : 4.01 (0.101) R2dC : 0.386 R2C : 0.672
β3 : -3.51 (0.12) R2dE : 0.21 R2E : 0.505
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.692 (0.0737) R2dN8 : 0.0209 R2N8 : 0.0339
σ : 0.652
deviance : 196.26
__
_____
C
peak time of C : 15.2
E
wheather : temperature
threshold : 6.917
memory length : 225
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 3.25
open length of G : 2.14

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
195.91 0.658 10.8 0.0499 3.99 -3.57 -0.26 -1.11 -0.672 15.2 9.32 230 3.18 2.28
196.32 0.653 10.8 0.141 4.01 -3.61 0.0685 -- -0.656 15.2 8.002 224 3.23 2.18
195.23 0.651 10.8 0.0728 4.04 -3.53 -- -0.933 -0.655 15.3 8.799 224 3.27 2.13
196.05 0.652 10.8 0.122 4.02 -3.49 -- -- -0.678 15.2 7.271 225 3.25 2.18
586.85 1.13 10.7 0.153 -- -5.46 -- 0.534 -0.529 -- 7.69 414 0.0155 3.32
460.36 1.01 10.9 -0.0578 5.76 -- 0.371 -- -0.944 16.1 -- -- -- --
460.74 1.01 10.9 -0.0538 5.77 -- -- -- -0.942 16.1 -- -- -- --
581.07 1.12 10.7 0.223 -- -5.43 -- -- -0.389 -- 5.472 416 0.0167 3.23
196.26 0.652 10.8 -- 4.01 -3.51 -- -- -0.692 15.2 6.917 225 3.25 2.14
2264.65 2.22 10.8 -0.287 -- -- -- -- -1.1 -- -- -- -- --
460.82 1 10.9 -- 5.77 -- -- -- -0.936 16.1 -- -- -- --
581.51 1.12 10.7 -- -- -5.39 -- -- -0.434 -- 5.014 420 0.0167 3.17
2266.82 2.22 10.8 -- -- -- -- -- -1.06 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 210.14 temperature 10.0 270 > th dose dependent rect. 3 2
2 212.71 temperature 10.0 270 > th dose dependent rect. 2 4
3 215.62 precipitation 0.1 270 < th dose independent rect. 5 22
4 215.62 precipitation 0.1 270 < th dose dependent rect. 5 22
5 215.87 wind 9.0 270 < th dose independent rect. 5 22
6 216.71 wind 7.0 270 < th dose independent rect. 3 2
8 217.52 temperature 10.0 270 > th dose independent rect. 3 2
10 217.52 temperature 30.0 270 < th dose independent rect. 3 2
11 217.52 humidity 50.0 270 > th dose independent rect. 3 2
14 217.52 atmosphere 995.0 270 > th dose independent rect. 3 2
15 217.52 atmosphere 1010.0 270 < th dose independent rect. 3 2
17 217.52 radiation 20.0 270 < th dose independent rect. 3 2
20 217.52 temperature 10.0 270 > th dose independent rect. 5 22
21 217.55 radiation 40.0 270 < th dose dependent rect. 3 2
24 217.66 radiation 1.0 270 < th dose independent rect. 3 2
29 217.99 precipitation 0.1 270 < th dose independent rect. 3 2
30 217.99 precipitation 0.1 270 < th dose dependent rect. 3 2
36 222.20 wind 9.0 270 < th dose dependent rect. 3 2
37 222.63 precipitation 0.1 270 < th dose independent rect. 6 20
38 222.63 precipitation 0.1 270 < th dose dependent rect. 6 20
40 223.76 humidity 50.0 270 > th dose dependent rect. 3 2
42 225.11 wind 9.0 270 < th dose independent rect. 6 20
43 226.66 precipitation 0.1 270 < th dose independent rect. 2 4
44 226.66 precipitation 0.1 270 < th dose dependent rect. 2 4
45 226.84 wind 7.0 270 < th dose independent rect. 2 4
49 227.35 radiation 30.0 270 < th dose dependent rect. 2 4
53 227.45 temperature 10.0 270 > th dose independent rect. 2 4
55 227.45 temperature 30.0 270 < th dose independent rect. 2 4
56 227.45 humidity 50.0 270 > th dose independent rect. 2 4
59 227.45 atmosphere 995.0 270 > th dose independent rect. 2 4
60 227.45 atmosphere 1015.0 270 < th dose independent rect. 2 4
61 227.45 radiation 20.0 270 < th dose independent rect. 2 4
64 227.45 temperature 10.0 270 > th dose independent rect. 6 20
72 229.23 wind 9.0 270 < th dose dependent rect. 2 4
94 231.85 temperature 10.0 10 > th dose dependent rect. 4 4
99 232.95 wind 9.0 10 < th dose independent rect. 8 20
104 233.58 wind 5.0 10 < th dose independent rect. 4 4
141 234.41 wind 9.0 10 < th dose independent rect. 4 4
142 234.41 temperature 10.0 10 > th dose independent rect. 4 4
144 234.41 temperature 30.0 10 < th dose independent rect. 4 4
145 234.41 humidity 50.0 10 > th dose independent rect. 4 4
147 234.41 atmosphere 995.0 10 > th dose independent rect. 4 4
148 234.41 atmosphere 1015.0 10 < th dose independent rect. 4 4
149 234.41 temperature 10.0 10 > th dose independent rect. 8 20
154 234.60 precipitation 0.1 10 < th dose independent rect. 4 4
155 234.60 precipitation 0.1 10 < th dose dependent rect. 4 4
162 235.27 humidity 50.0 270 > th dose dependent rect. 2 4
164 236.05 wind 9.0 10 < th dose dependent rect. 4 4
166 236.24 radiation 40.0 10 < th dose independent rect. 4 4
195 238.39 radiation 1.0 270 < th dose dependent rect. 2 10
217 239.98 radiation 1.0 270 < th dose independent rect. 2 11
269 244.30 atmosphere 995.0 270 > th dose dependent rect. 3 2
331 248.05 atmosphere 995.0 10 > th dose dependent rect. 4 4
359 249.05 atmosphere 995.0 10 > th dose independent rect. 8 20
365 249.45 atmosphere 995.0 90 > th dose independent rect. 7 21
417 254.82 wind 1.0 270 > th dose independent rect. 3 2
470 257.75 temperature 15.0 270 > th dose independent rect. 11 10
471 257.77 wind 1.0 270 > th dose independent rect. 6 20
483 258.64 radiation 1.0 270 < th dose dependent sin 2 NA
497 259.73 humidity 50.0 10 > th dose independent rect. 8 20
666 264.24 wind 7.0 270 < th dose independent rect. 21 14
685 265.34 humidity 50.0 270 > th dose independent rect. 21 14
702 266.23 atmosphere 1015.0 270 < th dose independent rect. 11 10
718 266.72 temperature 10.0 270 > th dose independent rect. 21 14
719 266.72 atmosphere 995.0 270 > th dose independent rect. 21 14
748 267.37 radiation 40.0 270 < th dose dependent rect. 15 15
751 267.47 radiation 1.0 270 < th dose independent sin 3 NA
771 268.41 temperature 10.0 270 > th dose dependent rect. 7 3
790 269.40 temperature 15.0 90 > th dose independent rect. 15 16
824 270.86 atmosphere 1015.0 90 < th dose dependent rect. 4 3
833 271.61 precipitation 0.1 270 < th dose independent rect. 21 14
834 271.61 precipitation 0.1 270 < th dose dependent rect. 21 14
839 271.91 atmosphere 1015.0 10 < th dose independent rect. 8 20
853 272.92 wind 9.0 1440 < th dose independent rect. 4 5
854 272.92 temperature 10.0 1440 > th dose independent rect. 4 5
857 272.92 humidity 50.0 1440 > th dose independent rect. 4 5
859 272.92 atmosphere 995.0 1440 > th dose independent rect. 4 5
860 272.92 atmosphere 1015.0 1440 < th dose independent rect. 4 5
861 272.92 temperature 10.0 1440 > th dose independent rect. 9 19
866 273.05 radiation 40.0 270 < th dose independent rect. 13 17
875 273.38 temperature 10.0 90 > th dose dependent rect. 7 6
903 274.73 radiation 1.0 270 > th dose independent sin 3 NA
934 275.16 radiation 40.0 270 < th dose independent rect. 11 19
980 276.14 wind 9.0 270 < th dose independent rect. 11 10