BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0810100 Os01g0810100|AK071916
(533 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0810100 Ribonuclease III domain containing protein 928 0.0
>Os01g0810100 Ribonuclease III domain containing protein
Length = 533
Score = 928 bits (2399), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 462/533 (86%), Positives = 462/533 (86%)
Query: 1 MAPPAMAFQXXXXXXXXXXXXXXXXXXXXXXXXXXXDHTXXXXXXXXXXXXXXXXXXRLL 60
MAPPAMAFQ DHT RLL
Sbjct: 1 MAPPAMAFQALALGPLPLPLPAARRRRRVRVLAVAADHTPPPPPSPSSPPEPANSPSRLL 60
Query: 61 RELAERKKAVSPKKKHPPRRFILKPPLDDERLTQRFXXXXXXXXXXXXXXXXXXXXXXXX 120
RELAERKKAVSPKKKHPPRRFILKPPLDDERLTQRF
Sbjct: 61 RELAERKKAVSPKKKHPPRRFILKPPLDDERLTQRFLSSPQLSLKALPLLSSCLPSAPLS 120
Query: 121 XXDRTWMDEYLLEAKQALGYPLAPSETLGDGDDDGCPARHFDVLLYLAFQHLDTSCERTR 180
DRTWMDEYLLEAKQALGYPLAPSETLGDGDDDGCPARHFDVLLYLAFQHLDTSCERTR
Sbjct: 121 AADRTWMDEYLLEAKQALGYPLAPSETLGDGDDDGCPARHFDVLLYLAFQHLDTSCERTR 180
Query: 181 TRHVRSGHSRLWFLGQYVLELAFCEFFLQRYPRESPGPMRERVFALIGKRAIPKWIKAAS 240
TRHVRSGHSRLWFLGQYVLELAFCEFFLQRYPRESPGPMRERVFALIGKRAIPKWIKAAS
Sbjct: 181 TRHVRSGHSRLWFLGQYVLELAFCEFFLQRYPRESPGPMRERVFALIGKRAIPKWIKAAS 240
Query: 241 LHNLVFPYDDLDKMIRKDREPPAKAVFWALFGAIYLCFGMPEVYRVLFEAFGMDPEDESC 300
LHNLVFPYDDLDKMIRKDREPPAKAVFWALFGAIYLCFGMPEVYRVLFEAFGMDPEDESC
Sbjct: 241 LHNLVFPYDDLDKMIRKDREPPAKAVFWALFGAIYLCFGMPEVYRVLFEAFGMDPEDESC 300
Query: 301 QPKLRRQLEDVDYVSVEFEKRQLTWQDVAAYRPPPDALFAHPRLFRACVPPGMHRFRGNI 360
QPKLRRQLEDVDYVSVEFEKRQLTWQDVAAYRPPPDALFAHPRLFRACVPPGMHRFRGNI
Sbjct: 301 QPKLRRQLEDVDYVSVEFEKRQLTWQDVAAYRPPPDALFAHPRLFRACVPPGMHRFRGNI 360
Query: 361 WDFDNRPKVMNTLGYPLPMNDRIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCLERL 420
WDFDNRPKVMNTLGYPLPMNDRIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCLERL
Sbjct: 361 WDFDNRPKVMNTLGYPLPMNDRIPEITEARNIELGLGLQLCFLHPSKHKFEHPRFCLERL 420
Query: 421 EYVGQKIQDLVMAERLLMKHLDAPGRWLAEKHRRLLMNKYCGRYLRDKHLHHYIIYGESV 480
EYVGQKIQDLVMAERLLMKHLDAPGRWLAEKHRRLLMNKYCGRYLRDKHLHHYIIYGESV
Sbjct: 421 EYVGQKIQDLVMAERLLMKHLDAPGRWLAEKHRRLLMNKYCGRYLRDKHLHHYIIYGESV 480
Query: 481 QDRFEHNRRLRNPSTTAVQQAIHGLAYCVYGKPDVRRLMFEVFDFEQVQPKAV 533
QDRFEHNRRLRNPSTTAVQQAIHGLAYCVYGKPDVRRLMFEVFDFEQVQPKAV
Sbjct: 481 QDRFEHNRRLRNPSTTAVQQAIHGLAYCVYGKPDVRRLMFEVFDFEQVQPKAV 533
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.326 0.142 0.458
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,363,350
Number of extensions: 788948
Number of successful extensions: 1931
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1927
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 427
Effective length of database: 11,501,117
Effective search space: 4910976959
Effective search space used: 4910976959
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 158 (65.5 bits)