FiT-DB / Search/ Help/ Sample detail
|
Os01g0802100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, chloroplast precursor (EC 2.7.1.148) (CMK) (4-(cytidine-5'-diphospho)-2-C-methyl- D-erythritol kinase) (CDPMEK).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.82 | 0.311 | 10.5 | -0.862 | 1 | 2.33 | 0.179 | -1.35 | -0.26 | 2.11 | 20.97 | 363 | -- | -- |
| 45.02 | 0.312 | 10.4 | -0.608 | 1.02 | 2.27 | 0.432 | -- | -0.202 | 1.93 | 20.62 | 345 | -- | -- |
| 43.93 | 0.309 | 10.5 | -0.886 | 1 | 2.33 | -- | -1.46 | -0.261 | 2.1 | 20.99 | 362 | -- | -- |
| 45.41 | 0.314 | 10.4 | -0.602 | 0.984 | 2.22 | -- | -- | -0.184 | 2 | 20.66 | 362 | -- | -- |
| 51.4 | 0.334 | 10.5 | -0.89 | -- | 2.18 | -- | -0.809 | -0.243 | -- | 20.72 | 867 | -- | -- |
| 134.21 | 0.543 | 10.4 | -0.0895 | 0.824 | -- | 0.106 | -- | 0.205 | 22.2 | -- | -- | -- | -- |
| 134.25 | 0.543 | 10.4 | -0.0937 | 0.823 | -- | -- | -- | 0.205 | 22.2 | -- | -- | -- | -- |
| 51.95 | 0.336 | 10.5 | -0.775 | -- | 2.4 | -- | -- | -0.222 | -- | 17.2 | 845 | -- | -- |
| 54.15 | 0.343 | 10.4 | -- | 0.936 | 2.03 | -- | -- | -0.0853 | 1.78 | 21.03 | 362 | -- | -- |
| 175.36 | 0.619 | 10.3 | -0.082 | -- | -- | -- | -- | 0.207 | -- | -- | -- | -- | -- |
| 134.48 | 0.542 | 10.4 | -- | 0.823 | -- | -- | -- | 0.216 | 22.2 | -- | -- | -- | -- |
| 63.93 | 0.372 | 10.4 | -- | -- | 1.93 | -- | -- | -0.0798 | -- | 21.25 | 851 | -- | -- |
| 175.53 | 0.618 | 10.3 | -- | -- | -- | -- | -- | 0.216 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.84 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 12 |
| 9 | 44.03 | temperature | 20 | 1440 | > th | dose dependent | sin | 3 | NA |
| 21 | 44.34 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 18 |
| 28 | 44.39 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 23 |
| 36 | 44.48 | radiation | 1 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 37 | 44.48 | radiation | 1 | 14400 | < th | dose dependent | rect. | 17 | 6 |
| 59 | 44.58 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 6 |
| 63 | 44.59 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 9 |
| 102 | 44.77 | radiation | 1 | 14400 | < th | dose dependent | rect. | 17 | 12 |
| 110 | 44.80 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 17 |
| 112 | 44.81 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 13 |
| 122 | 44.83 | radiation | 1 | 14400 | < th | dose dependent | rect. | 6 | 23 |
| 140 | 44.90 | radiation | 20 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 225 | 45.10 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 252 | 45.16 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 320 | 45.30 | radiation | 1 | 14400 | < th | dose dependent | rect. | 13 | 16 |
| 344 | 45.35 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 347 | 45.36 | radiation | 1 | 14400 | < th | dose dependent | sin | 18 | NA |
| 359 | 45.39 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 363 | 45.40 | radiation | 1 | 14400 | < th | dose dependent | rect. | 13 | 6 |
| 367 | 45.40 | radiation | 1 | 14400 | < th | dose dependent | rect. | 13 | 10 |
| 434 | 45.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 450 | 45.57 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 474 | 45.66 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 488 | 45.66 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 20 |
| 492 | 45.67 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 23 |
| 542 | 45.77 | radiation | 1 | 14400 | < th | dose dependent | rect. | 17 | 15 |
| 548 | 45.78 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 23 |
| 623 | 45.99 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 9 |
| 661 | 46.09 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 19 |
| 666 | 46.10 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 15 |
| 691 | 46.14 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 16 |
| 692 | 46.14 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 18 |
| 756 | 46.26 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 22 |
| 766 | 46.27 | radiation | 1 | 14400 | < th | dose dependent | rect. | 13 | 23 |
| 770 | 46.28 | radiation | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 783 | 46.29 | temperature | 30 | 1440 | < th | dose dependent | sin | 2 | NA |
| 808 | 46.32 | radiation | 1 | 14400 | < th | dose dependent | rect. | 10 | 23 |
| 929 | 46.54 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 21 |
| 942 | 46.57 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 2 |
| 998 | 46.69 | radiation | 1 | 14400 | > th | dose dependent | rect. | 17 | 12 |
