BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0802100 Os01g0802100|AK067589
         (401 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0802100  Similar to 4-diphosphocytidyl-2-C-methyl-D-ery...   764   0.0  

>Os01g0802100 Similar to 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase,
           chloroplast precursor (EC 2.7.1.148) (CMK)
           (4-(cytidine-5\'-diphospho)-2-C-methyl- D-erythritol
           kinase) (CDPMEK)
          Length = 401

 Score =  764 bits (1974), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 373/401 (93%), Positives = 373/401 (93%)

Query: 1   MACSTHLLSQSLYPLNRANPAAARGHLRFQASPSVRLGSGTSRRRALGLRVAASAEQGRR 60
           MACSTHLLSQSLYPLNRANPAAARGHLRFQASPSVRLGSGTSRRRALGLRVAASAEQGRR
Sbjct: 1   MACSTHLLSQSLYPLNRANPAAARGHLRFQASPSVRLGSGTSRRRALGLRVAASAEQGRR 60

Query: 61  QVEVEYDLQAKFNKLADQIDQNAGITRLNLFSPCKINVFLRITGKRPDGFHDLASLFHVI 120
           QVEVEYDLQAKFNKLADQIDQNAGITRLNLFSPCKINVFLRITGKRPDGFHDLASLFHVI
Sbjct: 61  QVEVEYDLQAKFNKLADQIDQNAGITRLNLFSPCKINVFLRITGKRPDGFHDLASLFHVI 120

Query: 121 SLGDTIKFSLSPSKSKDRLSTNVAGVPVDESNLIIKALNLYRKKTGTDNFFWIHLDKKVP 180
           SLGDTIKFSLSPSKSKDRLSTNVAGVPVDESNLIIKALNLYRKKTGTDNFFWIHLDKKVP
Sbjct: 121 SLGDTIKFSLSPSKSKDRLSTNVAGVPVDESNLIIKALNLYRKKTGTDNFFWIHLDKKVP 180

Query: 181 XXXXXXXXXXXXXXXXWAANQFSGCIASEKELQEWSGEIGSDIPFFFSQGAAYCTGRGEI 240
                           WAANQFSGCIASEKELQEWSGEIGSDIPFFFSQGAAYCTGRGEI
Sbjct: 181 TGAGLGGGSSNAATALWAANQFSGCIASEKELQEWSGEIGSDIPFFFSQGAAYCTGRGEI 240

Query: 241 VEDIRNPLPANLPMVLVKPPEACSTAEVYKRLRLEHTSQTDPLVLLKEITENGISQDACV 300
           VEDIRNPLPANLPMVLVKPPEACSTAEVYKRLRLEHTSQTDPLVLLKEITENGISQDACV
Sbjct: 241 VEDIRNPLPANLPMVLVKPPEACSTAEVYKRLRLEHTSQTDPLVLLKEITENGISQDACV 300

Query: 301 NDLEPPAFEVLPSLKRLKKRIIAANRGDYDAVFMXXXXXXXXXXXXPDPPAFVYDDDDYK 360
           NDLEPPAFEVLPSLKRLKKRIIAANRGDYDAVFM            PDPPAFVYDDDDYK
Sbjct: 301 NDLEPPAFEVLPSLKRLKKRIIAANRGDYDAVFMSGSGSTIVGIGSPDPPAFVYDDDDYK 360

Query: 361 DTFVSEACFLTRNENEWYREPISSKITSEEDLPPEVASVSD 401
           DTFVSEACFLTRNENEWYREPISSKITSEEDLPPEVASVSD
Sbjct: 361 DTFVSEACFLTRNENEWYREPISSKITSEEDLPPEVASVSD 401



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,419,519
Number of extensions: 541943
Number of successful extensions: 1602
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1601
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 298
Effective length of database: 11,657,759
Effective search space: 3474012182
Effective search space used: 3474012182
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)