BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0802100 Os01g0802100|AK067589
         (401 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G26930.1  | chr2:11491829-11494229 REVERSE LENGTH=384          459   e-129

>AT2G26930.1 | chr2:11491829-11494229 REVERSE LENGTH=384
          Length = 383

 Score =  459 bits (1182), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 222/335 (66%), Positives = 260/335 (77%)

Query: 54  SAEQGRRQVEVEYDLQAKFNKLADQIDQNAGITRLNLFSPCKINVFLRITGKRPDGFHDL 113
           S +  R+QVE+ +D   + NK+ D +D+ A ++RL LFSPCKINVFLRITGKR DGFHDL
Sbjct: 39  SVKASRKQVEIVFDPDERLNKIGDDVDKEAPLSRLKLFSPCKINVFLRITGKREDGFHDL 98

Query: 114 ASLFHVISLGDTIKFSLSPSKSKDRLSTNVAGVPVDESNLIIKALNLYRKKTGTDNFFWI 173
           ASLFHVISLGDTIKFSLSPSKSKDRLSTNV GVPVD  NLIIKALNLYRKKTG++ FFWI
Sbjct: 99  ASLFHVISLGDTIKFSLSPSKSKDRLSTNVQGVPVDGRNLIIKALNLYRKKTGSNRFFWI 158

Query: 174 HLDKKVPXXXXXXXXXXXXXXXXWAANQFSGCIASEKELQEWSGEIGSDIPFFFSQGAAY 233
           HLDKKVP                WAAN+ +G + +E ELQ+WS EIGSDIPFFFS GAAY
Sbjct: 159 HLDKKVPTGAGLGGGSSNAATALWAANELNGGLVTENELQDWSSEIGSDIPFFFSHGAAY 218

Query: 234 CTGRGEIVEDIRNPLPANLPMVLVKPPEACSTAEVYKRLRLEHTSQTDPLVLLKEITENG 293
           CTGRGEIV+D+  P P +LPMVL+KP EACSTAEVYKRLRL+ TS  +PL LL+ +T NG
Sbjct: 219 CTGRGEIVQDLPPPFPLDLPMVLIKPREACSTAEVYKRLRLDQTSNINPLTLLENVTSNG 278

Query: 294 ISQDACVNDLEPPAFEVLPSLKRLKKRIIAANRGDYDAVFMXXXXXXXXXXXXPDPPAFV 353
           +SQ  CVNDLEPPAF VLPSLKRLK+RIIA+ RG+YDAVFM            PDPP F+
Sbjct: 279 VSQSICVNDLEPPAFSVLPSLKRLKQRIIASGRGEYDAVFMSGSGSTIIGIGSPDPPQFI 338

Query: 354 YDDDDYKDTFVSEACFLTRNENEWYREPISSKITS 388
           YDD++YK+ F+SEA F+TR  NEWY+EP S+  T+
Sbjct: 339 YDDEEYKNVFLSEANFMTREANEWYKEPASANATT 373



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.134    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,478,031
Number of extensions: 342903
Number of successful extensions: 766
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 765
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 300
Effective length of database: 8,337,553
Effective search space: 2501265900
Effective search space used: 2501265900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)