Os01g0798500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Malate synthase-like family protein.
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Os01g0798500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Malate synthase-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 73.9 | 0.404 | 11.5 | 0.134 | 0.653 | 0.0407 | -0.242 | 8.58 | -0.392 | 21.2 | 30.08 | 1690 | -- | -- |
| 79.14 | 0.414 | 11.7 | -1.29 | 0.633 | 1.05 | -0.202 | -- | -0.479 | 20.8 | 29.8 | 3789 | -- | -- |
| 74.1 | 0.401 | 11.5 | 0.142 | 0.649 | 0.0389 | -- | 8.68 | -0.393 | 21.2 | 30.09 | 1713 | -- | -- |
| 79.26 | 0.415 | 11.7 | -1.3 | 0.626 | 1.04 | -- | -- | -0.49 | 20.9 | 29.81 | 3904 | -- | -- |
| 93.97 | 0.451 | 11.5 | 0.00338 | -- | 0.0993 | -- | 8.99 | -0.431 | -- | 31.23 | 2203 | -- | -- |
| 113.64 | 0.5 | 11.7 | -1.03 | 0.683 | -- | -0.124 | -- | -0.609 | 21.3 | -- | -- | -- | -- |
| 113.69 | 0.499 | 11.7 | -1.03 | 0.684 | -- | -- | -- | -0.609 | 21.4 | -- | -- | -- | -- |
| 101.14 | 0.468 | 11.6 | -1.3 | -- | 1.12 | -- | -- | -0.493 | -- | 29.9 | 3769 | -- | -- |
| 120.79 | 0.512 | 11.6 | -- | 0.649 | 0.859 | -- | -- | -0.312 | 20.7 | 30.8 | 3514 | -- | -- |
| 141 | 0.555 | 11.7 | -1.02 | -- | -- | -- | -- | -0.612 | -- | -- | -- | -- | -- |
| 141.52 | 0.556 | 11.7 | -- | 0.683 | -- | -- | -- | -0.495 | 21.2 | -- | -- | -- | -- |
| 140.59 | 0.552 | 11.6 | -- | -- | 0.913 | -- | -- | -0.326 | -- | 31.2 | 2202 | -- | -- |
| 168.66 | 0.606 | 11.6 | -- | -- | -- | -- | -- | -0.498 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 70.25 | temperature | 25 | 4320 | > th | dose dependent | rect. | 4 | 3 |
| 4 | 71.21 | temperature | 25 | 4320 | > th | dose independent | rect. | 5 | 2 |
| 5 | 71.25 | temperature | 25 | 4320 | < th | dose independent | rect. | 5 | 2 |
| 20 | 72.60 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 1 |
| 21 | 72.60 | temperature | 30 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 25 | 72.65 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 1 |
| 28 | 72.73 | temperature | 30 | 1440 | < th | dose independent | rect. | 10 | 3 |
| 51 | 72.96 | temperature | 30 | 1440 | < th | dose independent | rect. | 1 | 13 |
| 53 | 72.97 | temperature | 30 | 1440 | < th | dose independent | rect. | 3 | 11 |
| 59 | 73.00 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 18 |
| 66 | 73.03 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 16 |
| 87 | 73.15 | temperature | 25 | 4320 | > th | dose dependent | rect. | 22 | 11 |
| 111 | 73.30 | temperature | 25 | 4320 | > th | dose dependent | rect. | 24 | 9 |
| 151 | 73.70 | temperature | 30 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 156 | 73.74 | temperature | 30 | 1440 | > th | dose independent | sin | 7 | NA |
| 157 | 73.76 | temperature | 30 | 1440 | < th | dose independent | sin | 7 | NA |
| 189 | 73.97 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 191 | 73.97 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 22 |
| 194 | 73.99 | temperature | 30 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 196 | 74.03 | temperature | 30 | 1440 | > th | dose independent | rect. | 16 | 22 |
| 238 | 74.27 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 5 |
| 287 | 74.43 | temperature | 20 | 30 | > th | dose dependent | rect. | 7 | 23 |
| 402 | 74.89 | temperature | 30 | 1440 | > th | dose dependent | sin | 7 | NA |
| 403 | 74.89 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 496 | 75.21 | temperature | 25 | 4320 | > th | dose dependent | sin | 10 | NA |
| 525 | 75.36 | temperature | 25 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 609 | 75.52 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 616 | 75.57 | temperature | 30 | 1440 | < th | dose independent | rect. | 9 | 9 |
| 703 | 75.67 | temperature | 30 | 1440 | < th | dose independent | rect. | 4 | 14 |
| 716 | 75.68 | temperature | 30 | 1440 | < th | dose independent | rect. | 20 | 22 |
| 728 | 75.70 | temperature | 30 | 1440 | < th | dose independent | rect. | 22 | 20 |
| 826 | 75.93 | temperature | 25 | 4320 | > th | dose independent | rect. | 19 | 8 |
| 956 | 76.12 | temperature | 30 | 1440 | > th | dose independent | no | NA | NA |