BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0798500 Os01g0798500|AK068219
         (292 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0798500  Malate synthase-like family protein                 384   e-107

>Os01g0798500 Malate synthase-like family protein
          Length = 292

 Score =  384 bits (986), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 211/265 (79%), Positives = 211/265 (79%)

Query: 28  VATRPSSLLSLPHCHCGLPLPXXXXXXXXXXXXXXXXXXXXXLGQDEPGVSDTAVAPEGE 87
           VATRPSSLLSLPHCHCGLPLP                     LGQDEPGVSDTAVAPEGE
Sbjct: 28  VATRPSSLLSLPHCHCGLPLPSTANARAYSRSSRRRRRVAASLGQDEPGVSDTAVAPEGE 87

Query: 88  GDSEPPXXXXXXXXXXXXXXXXXXXXXXDLEDIRQVKRVLELLQKNRDMTFGEVKLTIMI 147
           GDSEPP                      DLEDIRQVKRVLELLQKNRDMTFGEVKLTIMI
Sbjct: 88  GDSEPPASSDGAAGDIAASAEQPEASPEDLEDIRQVKRVLELLQKNRDMTFGEVKLTIMI 147

Query: 148 EDPRDIERKRLLGIEDPDEITRDDLADALVEVNEGRIPENRVALQLLAKEMTEWPDLEME 207
           EDPRDIERKRLLGIEDPDEITRDDLADALVEVNEGRIPENRVALQLLAKEMTEWPDLEME
Sbjct: 148 EDPRDIERKRLLGIEDPDEITRDDLADALVEVNEGRIPENRVALQLLAKEMTEWPDLEME 207

Query: 208 APKKKSKPGKSVYAKATDTGIDPETAAKRLNIDWDSAAXXXXXXXXXXXTEVPSAVGYSA 267
           APKKKSKPGKSVYAKATDTGIDPETAAKRLNIDWDSAA           TEVPSAVGYSA
Sbjct: 208 APKKKSKPGKSVYAKATDTGIDPETAAKRLNIDWDSAADLDDEEEEDDETEVPSAVGYSA 267

Query: 268 LYLLTAFPVIIGISVVLILFYNSLQ 292
           LYLLTAFPVIIGISVVLILFYNSLQ
Sbjct: 268 LYLLTAFPVIIGISVVLILFYNSLQ 292



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,080,774
Number of extensions: 237714
Number of successful extensions: 451
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 449
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 192
Effective length of database: 11,814,401
Effective search space: 2268364992
Effective search space used: 2268364992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 155 (64.3 bits)