BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0798500 Os01g0798500|AK068219
         (292 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G44650.1  | chr5:18013396-18015292 FORWARD LENGTH=281          221   4e-58

>AT5G44650.1 | chr5:18013396-18015292 FORWARD LENGTH=281
          Length = 280

 Score =  221 bits (563), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 108/177 (61%), Positives = 138/177 (77%), Gaps = 2/177 (1%)

Query: 116 DLEDIRQVKRVLELLQKNRDMTFGEVKLTIMIEDPRDIERKRLLGIEDPDEITRDDLADA 175
           DL+ + ++KRV+ELL++NRDM F EVKLTIMIEDPR++ER+RLLGIED D  +RDDLA+A
Sbjct: 106 DLKYVNEIKRVIELLRRNRDMIFSEVKLTIMIEDPRELERRRLLGIEDADTPSRDDLAEA 165

Query: 176 LVEVNEGRIPENRVALQLLAKEMTEWPDLEMEAPKKKSKPGKSVYAKATDTGIDPETAAK 235
           L +VN+G+IP++R  L++L +EM  WP+LE+E  KK+   GKS+YAK+TDTGIDP+ AAK
Sbjct: 166 LEQVNDGKIPKDRATLRMLHEEMIRWPNLEVEVSKKQR--GKSMYAKSTDTGIDPKEAAK 223

Query: 236 RLNIDWDSAAXXXXXXXXXXXTEVPSAVGYSALYLLTAFPVIIGISVVLILFYNSLQ 292
           RLN++WDSAA             V    GY ALY ++A PVIIGISVVLILFYNSLQ
Sbjct: 224 RLNVEWDSAAAIEEVDVDDEQGVVTKVAGYGALYFVSALPVIIGISVVLILFYNSLQ 280



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,491,573
Number of extensions: 150531
Number of successful extensions: 321
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 320
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 194
Effective length of database: 8,419,801
Effective search space: 1633441394
Effective search space used: 1633441394
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 111 (47.4 bits)