Os01g0796700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os01g0796700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Zinc finger, RING-type domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 92.62 | 0.452 | 6.03 | -0.587 | 0.208 | 1.03 | -0.417 | -0.868 | -0.364 | 15.2 | 20.7 | 3959 | -- | -- |
| 93.62 | 0.451 | 6.01 | -0.45 | 0.22 | 1.19 | -0.272 | -- | -0.323 | 15.6 | 20.59 | 3965 | -- | -- |
| 93.09 | 0.449 | 6.03 | -0.556 | 0.208 | 1.03 | -- | -0.765 | -0.361 | 15.7 | 20.7 | 4001 | -- | -- |
| 93.89 | 0.451 | 6 | -0.436 | 0.218 | 1.18 | -- | -- | -0.321 | 15.9 | 20.6 | 3935 | -- | -- |
| 95.59 | 0.455 | 6.03 | -0.578 | -- | 1 | -- | -0.841 | -0.36 | -- | 20.65 | 3908 | -- | -- |
| 121.1 | 0.516 | 5.92 | 0.278 | 0.168 | -- | -0.246 | -- | 0.0181 | 15.7 | -- | -- | -- | -- |
| 121.16 | 0.515 | 5.92 | 0.274 | 0.176 | -- | -- | -- | 0.0168 | 16.7 | -- | -- | -- | -- |
| 96.5 | 0.458 | 6 | -0.434 | -- | 1.16 | -- | -- | -0.323 | -- | 20.5 | 3935 | -- | -- |
| 96.51 | 0.458 | 5.98 | -- | 0.203 | 0.89 | -- | -- | -0.235 | 15.8 | 21.4 | 3887 | -- | -- |
| 122.81 | 0.518 | 5.92 | 0.268 | -- | -- | -- | -- | 0.0122 | -- | -- | -- | -- | -- |
| 123.15 | 0.519 | 5.93 | -- | 0.171 | -- | -- | -- | -0.0137 | 16.7 | -- | -- | -- | -- |
| 98.96 | 0.463 | 5.98 | -- | -- | 0.874 | -- | -- | -0.245 | -- | 21.4 | 3854 | -- | -- |
| 124.7 | 0.521 | 5.93 | -- | -- | -- | -- | -- | -0.0175 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 85.98 | temperature | 10 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 3 | 88.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 12 |
| 4 | 88.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 7 |
| 18 | 90.20 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 20 |
| 26 | 90.94 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 5 |
| 29 | 91.03 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 17 |
| 31 | 91.07 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 12 |
| 65 | 91.95 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 5 |
| 76 | 92.17 | temperature | 10 | 720 | > th | dose dependent | sin | 5 | NA |
| 85 | 92.28 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 2 | 2 |
| 88 | 92.33 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 6 |
| 94 | 92.41 | temperature | 30 | 720 | < th | dose dependent | sin | 5 | NA |
| 106 | 92.53 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 6 |
| 134 | 92.76 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 18 |
| 183 | 93.17 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 224 | 93.41 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 233 | 93.46 | radiation | 1 | 43200 | < th | dose dependent | rect. | 3 | 1 |
| 240 | 93.49 | temperature | 20 | 4320 | > th | dose independent | sin | 13 | NA |
| 264 | 93.66 | temperature | 20 | 4320 | < th | dose independent | sin | 13 | NA |
| 299 | 93.83 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 15 |
| 304 | 93.85 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 9 |
| 316 | 93.87 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 9 |
| 553 | 94.37 | temperature | 20 | 720 | < th | dose independent | sin | 6 | NA |
| 623 | 94.49 | temperature | 20 | 4320 | < th | dose independent | rect. | 6 | 1 |
| 835 | 94.88 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 12 |
| 904 | 94.98 | temperature | 20 | 4320 | > th | dose independent | rect. | 5 | 23 |
| 946 | 95.05 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |