BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0796700 Os01g0796700|AK120491
         (489 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0796700  Zinc finger, RING-type domain containing protein    778   0.0  
Os05g0497650  Conserved hypothetical protein                      393   e-109
Os11g0578200                                                      135   1e-31
Os11g0574200  Conserved hypothetical protein                       91   1e-18

>Os01g0796700 Zinc finger, RING-type domain containing protein
          Length = 489

 Score =  778 bits (2008), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/489 (82%), Positives = 402/489 (82%)

Query: 1   MPAQKXXXXXXXXXXXXDHVETNGMTXXXXXXXXXXXXXXXXXXXXVPLPPRGGSXXXXX 60
           MPAQK            DHVETNGMT                    VPLPPRGGS     
Sbjct: 1   MPAQKRRLSSSPSSRPRDHVETNGMTGASKAAAGSGGGGGGGSGGGVPLPPRGGSAAAAA 60

Query: 61  XXXXXDPQPQREGDSDAEFXXXXXXXXXXXXXXXXXXEFIIVKLAEIRKEVQCPICLGII 120
                DPQPQREGDSDAEF                  EFIIVKLAEIRKEVQCPICLGII
Sbjct: 61  AKRAADPQPQREGDSDAEFGGGVDGDSESSQSDGDMDEFIIVKLAEIRKEVQCPICLGII 120

Query: 121 RKTRTVMECLHRFCRDCIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDID 180
           RKTRTVMECLHRFCRDCIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDID
Sbjct: 121 RKTRTVMECLHRFCRDCIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALYPDID 180

Query: 181 KYXXXXXXXXXXXRSRNKKIQATIEETIRRQSEAVGKKRSTAKATATVFARKYRRNMRTR 240
           KY           RSRNKKIQATIEETIRRQSEAVGKKRSTAKATATVFARKYRRNMRTR
Sbjct: 181 KYEEEELAFSEEERSRNKKIQATIEETIRRQSEAVGKKRSTAKATATVFARKYRRNMRTR 240

Query: 241 GRGKTIAPDIAPTGSDNEDREEGNAIDTTKESSSADDRSSDLMXXXXXXXXXXXXXXXXT 300
           GRGKTIAPDIAPTGSDNEDREEGNAIDTTKESSSADDRSSDLM                T
Sbjct: 241 GRGKTIAPDIAPTGSDNEDREEGNAIDTTKESSSADDRSSDLMPKRGRKRPASRASPART 300

Query: 301 IGSSDHVFEENDELIGGKESFTTSPLRGEMLAWGKNGTRSQTRHGSVGGSNGRMAKGGRV 360
           IGSSDHVFEENDELIGGKESFTTSPLRGEMLAWGKNGTRSQTRHGSVGGSNGRMAKGGRV
Sbjct: 301 IGSSDHVFEENDELIGGKESFTTSPLRGEMLAWGKNGTRSQTRHGSVGGSNGRMAKGGRV 360

Query: 361 AKLVDHLRTTDDMDKEFNLYLVLLPLDEQSMPNLDKPYISCRPTLSIRHLVQFIALQLSR 420
           AKLVDHLRTTDDMDKEFNLYLVLLPLDEQSMPNLDKPYISCRPTLSIRHLVQFIALQLSR
Sbjct: 361 AKLVDHLRTTDDMDKEFNLYLVLLPLDEQSMPNLDKPYISCRPTLSIRHLVQFIALQLSR 420

Query: 421 QVEELDIFMRIDHCNGSVTTQDCTTGVAKMRLSDGLERIREDKLLSELHPSFTSHHGDLE 480
           QVEELDIFMRIDHCNGSVTTQDCTTGVAKMRLSDGLERIREDKLLSELHPSFTSHHGDLE
Sbjct: 421 QVEELDIFMRIDHCNGSVTTQDCTTGVAKMRLSDGLERIREDKLLSELHPSFTSHHGDLE 480

Query: 481 LLYALKTQG 489
           LLYALKTQG
Sbjct: 481 LLYALKTQG 489



>Os05g0497650 Conserved hypothetical protein
          Length = 514

 Score =  393 bits (1009), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 198/334 (59%), Positives = 242/334 (72%), Gaps = 2/334 (0%)

Query: 146 NNECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYXXXXXXXXXXXRSRNKKIQATIE 205
           NNECPACRTHCASRRSLRDDPNYDALI ALYPDIDKY           R+RNKKIQA+I 
Sbjct: 74  NNECPACRTHCASRRSLRDDPNYDALILALYPDIDKYEEEELAFSEEERTRNKKIQASIA 133

Query: 206 ETIRRQSEAVGKKRSTAKATATVFARKYRRNMRTRGRGKTIAPDIAPTGSDNEDREEGNA 265
           ET RRQSEA+ KKRS AKAT +   R+ R NMR + RG+T +PDI  T +++EDR+E N 
Sbjct: 134 ETFRRQSEALVKKRSVAKATGSTITRRTRGNMRAKRRGRTSSPDIVATDNEDEDRDE-NG 192

Query: 266 IDTTKESSSADDRSSDLMXXXXXXXXXXXXXXXXTIGSSDHVFEENDELIGGKESFTTSP 325
            + +KESSS DDRS D+                 +IG  D  FE+ D+L  G++  +TSP
Sbjct: 193 NEGSKESSSVDDRSPDVRQKRVRRWPVPRSSPAKSIGGIDSSFEDIDDLGSGRDIMSTSP 252

Query: 326 LRGEMLAWGKNGTRSQTRHGSVGGSNGRMAKGGRVAKLVDHLRTTDDMDKEFNLYLVLLP 385
           LRGEMLAWGKNGTRSQTRHG+ GGS+GRMAKGGRV KLV++LR TD+ D +FNLYLVLLP
Sbjct: 253 LRGEMLAWGKNGTRSQTRHGNSGGSSGRMAKGGRVTKLVEYLRNTDEFDNKFNLYLVLLP 312

Query: 386 LDEQSMPNLDKPYISCRPTLSIRHLVQFIALQLSRQVEELDIFMRIDHCNGSVTTQDCTT 445
           L+ QSMP L+KPY+SC+PT S+RHL QF+ALQLSR  +E++IF+R +  NG   + D + 
Sbjct: 313 LNGQSMPKLEKPYLSCQPTFSVRHLCQFVALQLSRHAKEVEIFIRKNPNNGCFASIDTSA 372

Query: 446 GVAKMRLSDGLERIREDKLLSELHPSFTSHHGDL 479
              K+   D LER+ E+K LSEL+PS  S HGDL
Sbjct: 373 DEIKLN-HDALERLEEEKSLSELYPSLASGHGDL 405



>Os11g0578200 
          Length = 874

 Score =  135 bits (339), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 76/150 (50%), Positives = 95/150 (63%), Gaps = 6/150 (4%)

Query: 117 LGIIRKTRTVMECLHRFCRDCIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALIAALY 176
           L II+K R + ECLHRFCRDCI+KSMRLGN+ECPACRT  AS  SL+ DPN+DALI  LY
Sbjct: 36  LSIIQKARIITECLHRFCRDCIEKSMRLGNDECPACRTP-ASSHSLKVDPNFDALILTLY 94

Query: 177 PDIDKYXXXXXXXXXXXRSRNKKIQATIEETIRRQSEAVGKKRSTAKATATVFARKYRRN 236
           PD+ K            ++ +KKIQA+ +E   R+ EA+GKK S AKA  +    + + N
Sbjct: 95  PDLHK-DEEEELAFTEEKTCHKKIQASTDEAPHRRKEALGKKSSAAKAIGS---SRSQGN 150

Query: 237 MRTRGRGKTIAPDIAPTGS-DNEDREEGNA 265
           M  R RG    PDI PT   D  + EEG +
Sbjct: 151 MLARKRGHIDFPDIVPTKVRDFHNFEEGRS 180



>Os11g0574200 Conserved hypothetical protein
          Length = 775

 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/137 (44%), Positives = 76/137 (55%), Gaps = 6/137 (4%)

Query: 146 NNECPACRTHCASRRSLRDDPNYDALIAALYPDIDKYXXXXXXXXXXXRSRNKKIQATIE 205
           N+ECPACRT  AS  SL+ DPN+DALI  LYPD+ K              R KKIQA+ +
Sbjct: 14  NDECPACRT-LASSHSLKVDPNFDALILTLYPDLHKDEEEELAFTEEKTCR-KKIQASTD 71

Query: 206 ETIRRQSEAVGKKRSTAKATATVFARKYRRNMRTRGRGKTIAPDIAPTGSDNEDREEGNA 265
           E   R+ EA+GKKRS AKA  +    + + NM  R RG    PDI P+    +DREE N 
Sbjct: 72  EAPHRRKEALGKKRSAAKAIGS---SRSQGNMLARKRGHIGFPDIVPSKVGGKDREE-ND 127

Query: 266 IDTTKESSSADDRSSDL 282
                E S  D+ S D+
Sbjct: 128 NSGCDEWSLFDEYSQDI 144



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.133    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,799,484
Number of extensions: 526161
Number of successful extensions: 1982
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1973
Number of HSP's successfully gapped: 4
Length of query: 489
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 384
Effective length of database: 11,553,331
Effective search space: 4436479104
Effective search space used: 4436479104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)