BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0796700 Os01g0796700|AK120491
(489 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G03770.2 | chr1:944772-947431 FORWARD LENGTH=469 238 4e-63
AT5G44280.2 | chr5:17836115-17839114 REVERSE LENGTH=526 124 1e-28
AT4G21070.1 | chr4:11248174-11252633 FORWARD LENGTH=942 52 6e-07
AT1G06770.1 | chr1:2079222-2081707 REVERSE LENGTH=422 50 2e-06
AT1G28327.1 | chr1:9932120-9933195 FORWARD LENGTH=275 50 3e-06
AT3G23060.1 | chr3:8200868-8203116 FORWARD LENGTH=481 50 4e-06
>AT1G03770.2 | chr1:944772-947431 FORWARD LENGTH=469
Length = 468
Score = 238 bits (608), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 142/397 (35%), Positives = 223/397 (56%), Gaps = 35/397 (8%)
Query: 98 EFIIVKLAEIRKEVQCPICLGIIRKTRTVMECLHRFCRDCIDKSMRLGNNECPACRTHCA 157
E+++V LA+I K+VQC ICLGIIRKTRTVMECLHRFCR+CIDKSMRLGNNECP CR HCA
Sbjct: 90 EYMVVDLADICKDVQCSICLGIIRKTRTVMECLHRFCRECIDKSMRLGNNECPTCRKHCA 149
Query: 158 SRRSLRDDPNYDALIAALYPDIDKYXXXXXXXXXXXRSRNKKIQATIEETIRRQSEAVGK 217
SRRSLRDDPN+DALIAAL+ +IDK+ +RNK+IQA+I + +RQS+A+ K
Sbjct: 150 SRRSLRDDPNFDALIAALFKNIDKFEEEELNFRQDDEARNKQIQASIAQVSQRQSKALVK 209
Query: 218 KRSTAKATATVFARKYRRNMRTRGRG-KTIAPDIAPTGSDNEDREEGNAIDTTKESSSAD 276
++S K TA + + R R + I D + D++ + G
Sbjct: 210 RKSVGKGTAILSRSRRSGGGSRRRRNCRNIEQDTSEANDDDDQNKRGK------------ 257
Query: 277 DRSSDLMXXXXXXXXXXXXXXXXTIGSSDHVFEENDELIGGKESFTTSPL---RGEMLAW 333
D SSD ++D+ E ++S SP+ E++AW
Sbjct: 258 DSSSDEPCERQRKKRSATQPSSSNANNNDNCAGNGTEQTHQRDSRVISPVLVWNSELIAW 317
Query: 334 GKNGTRSQTRHGSVGGSNGRMAK-GGRVAKLVDHLRTTDDMDKEFNLYLVLLPLDEQSMP 392
G+ GTRS TR G+ + G ++K R+ +LV++L + + E +++L L+ LD + +
Sbjct: 318 GRGGTRSNTRQGN--NNQGAISKRNARLKRLVEYLGSLEGNSVELDIHLKLVSLDTEGLL 375
Query: 393 NLDKPYISCRPTLSIRHLVQ------FIALQLSRQVEELDIFMRIDHCNGSVTTQDCTTG 446
NL +PY+ RPTL ++ L + ++A L + EE+++ + ++D T
Sbjct: 376 NLHEPYLCFRPTLLVKQLREVSSLPLYVARHLKLKAEEVELLV----------SKDGDTV 425
Query: 447 VAKMRLSDGLERIREDKLLSELHPSFTSHHGDLELLY 483
+ ++ ++ +++D+ +++L S +G + ++Y
Sbjct: 426 IGNKTSTEKMQSLQDDETVAKLKVDCISSNGYMIVVY 462
>AT5G44280.2 | chr5:17836115-17839114 REVERSE LENGTH=526
Length = 525
Score = 124 bits (311), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 86/136 (63%), Gaps = 5/136 (3%)
Query: 98 EFIIVKLAEIRKEVQCPICLGIIRKTRTVMECLHRFCRDCIDKSMRL----GNNECPACR 153
EF+ + L EIRK+VQCPICL ++ R + ++ +DC S + NNECPACR
Sbjct: 121 EFMEIDLGEIRKDVQCPICLVGMKFLRLFI-SYYKENKDCDGMSPQFCATFKNNECPACR 179
Query: 154 THCASRRSLRDDPNYDALIAALYPDIDKYXXXXXXXXXXXRSRNKKIQATIEETIRRQSE 213
HCASRRSLRDDP +DALIAAL+ +ID Y +RNK+IQA+I + +RQSE
Sbjct: 180 KHCASRRSLRDDPKFDALIAALFTNIDSYEEEELAFHEDEMARNKQIQASIAQISQRQSE 239
Query: 214 AVGKKRSTAKATATVF 229
A+ K+RS K A +
Sbjct: 240 ALVKRRSLGKEAAVLM 255
Score = 98.2 bits (243), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 91/153 (59%), Gaps = 6/153 (3%)
Query: 329 EMLAWGKNGTRSQTRHGS-VGGSNGRMAKGGRVAKLVDHLRTT-DDMDKEFNLYLVLLPL 386
E+LAWG+ GTRS TRHG+ G + + + RV KLV++LR++ D E ++++ L+ L
Sbjct: 360 EILAWGRGGTRSNTRHGNNTSGGSSKSVRNARVNKLVEYLRSSVDGSSVELDIHVKLVSL 419
Query: 387 DEQSMPNLDKPYISCRPTLSIRHLVQFIALQLSRQVEELDIFM---RIDHCNGSVTTQDC 443
D + +P+L +PY+ CRPTL ++ L +F+ALQ+ + EE+++ + R+ + ++
Sbjct: 420 DTKCIPDLPQPYLCCRPTLLVKQLREFVALQIHLKTEEVELLVTRRRVGE-DAAIENLPA 478
Query: 444 TTGVAKMRLSDGLERIREDKLLSELHPSFTSHH 476
T + D + + +++ LS L F S H
Sbjct: 479 VTPASAAASKDEMLSLEDNETLSRLKIDFISSH 511
>AT4G21070.1 | chr4:11248174-11252633 FORWARD LENGTH=942
Length = 941
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 46/77 (59%), Gaps = 4/77 (5%)
Query: 104 LAEIRKEVQCPICLGIIRKTRTVMECLHRFCRDCIDKSMRLGNNECPACRTHCASRRSLR 163
L + +E++CPICL + + + C H FC CI KSM++ + CP C+ RR +R
Sbjct: 7 LERMGRELKCPICLSLYN-SAVSLSCNHVFCNACIVKSMKM-DATCPVCKIP-YHRREIR 63
Query: 164 DDPNYDALIAALYPDID 180
P+ D+L+ ++Y +++
Sbjct: 64 GAPHMDSLV-SIYKNME 79
>AT1G06770.1 | chr1:2079222-2081707 REVERSE LENGTH=422
Length = 421
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 99 FIIVKLAEIRKEVQCPICLGIIRKTRTVMECLHRFCRDCIDKSMRLGNNE-CPACRTHCA 157
I VK +R + C IC I+R T+ ECLH FCR CI + + E CP C
Sbjct: 2 MIKVKKETMRACLSCSICDNILRDATTISECLHTFCRKCIYEKITEDEIETCPVCNIDLG 61
Query: 158 SR--RSLRDDPNYDALIAALY 176
S LR D N L A ++
Sbjct: 62 STPLEKLRPDHNLQDLRAKIF 82
>AT1G28327.1 | chr1:9932120-9933195 FORWARD LENGTH=275
Length = 274
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 61/116 (52%), Gaps = 14/116 (12%)
Query: 316 GGKESFTTSPLRGEM-LAWGKNGTRSQTRHGSVGGSNGRMAKGGRVAKLVDHLRTTDDMD 374
G +E F + L + L WGK G RS + G+ R V + H T D+MD
Sbjct: 123 GTEEEFMETNLMSLVSLQWGKRGKRSMRK-----GTWKRHILENHVGQ---HKNTQDEMD 174
Query: 375 KEFNLYLVLLPLDEQSMPNLDKPYISCRPTLSIRHLVQ-FIALQLSRQVEELDIFM 429
+ ++L+ +D +PNL P +SC+P ++++ L + ++A + Q E++++++
Sbjct: 175 ----IQVLLVSMDASVIPNLQNPQVSCKPNVTLKSLCEMYVAPYVEAQAEKIEMYV 226
>AT3G23060.1 | chr3:8200868-8203116 FORWARD LENGTH=481
Length = 480
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 106 EIRKEVQCPICLGIIRKTRTVMECLHRFCRDCI-DKSMRLGNNECPACRTHCA--SRRSL 162
E++ + CPIC + T+ ECLH FCR CI +K + N CP C + L
Sbjct: 9 EVKPCLACPICTNPFKDATTISECLHTFCRSCIRNKFINERVNACPVCNVNLGVFPLEKL 68
Query: 163 RDDPNYDALIAALY 176
R D + L +Y
Sbjct: 69 RSDCTWQDLKLKIY 82
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.133 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,629,420
Number of extensions: 326258
Number of successful extensions: 1113
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1130
Number of HSP's successfully gapped: 7
Length of query: 489
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 386
Effective length of database: 8,282,721
Effective search space: 3197130306
Effective search space used: 3197130306
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)