Os01g0786700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0786700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 252.99 | 0.747 | 5.33 | 0.545 | 1.25 | 3.16 | 1.82 | 0.927 | 0.427 | 18.6 | 20.62 | 2414 | -- | -- |
| 254.56 | 0.743 | 5.36 | 0.346 | 1.25 | 3.06 | 1.84 | -- | 0.383 | 18.6 | 20.6 | 2417 | -- | -- |
| 260.4 | 0.752 | 5.32 | 0.527 | 1.25 | 3.17 | -- | 0.983 | 0.432 | 19 | 20.6 | 2408 | -- | -- |
| 262.1 | 0.754 | 5.36 | 0.333 | 1.26 | 3.04 | -- | -- | 0.39 | 19 | 20.65 | 2409 | -- | -- |
| 338.47 | 0.857 | 5.29 | 0.594 | -- | 3.17 | -- | 1.16 | 0.419 | -- | 20.77 | 2236 | -- | -- |
| 458.44 | 1 | 5.19 | 1.87 | 1.3 | -- | 1.71 | -- | 1.17 | 19.2 | -- | -- | -- | -- |
| 464.9 | 1.01 | 5.19 | 1.83 | 1.31 | -- | -- | -- | 1.18 | 19.6 | -- | -- | -- | -- |
| 341.02 | 0.86 | 5.33 | 0.345 | -- | 3.05 | -- | -- | 0.361 | -- | 20.78 | 2250 | -- | -- |
| 264.08 | 0.757 | 5.38 | -- | 1.26 | 3.13 | -- | -- | 0.31 | 18.9 | 20.73 | 2458 | -- | -- |
| 556.78 | 1.1 | 5.15 | 1.81 | -- | -- | -- | -- | 1.16 | -- | -- | -- | -- | -- |
| 553.34 | 1.1 | 5.23 | -- | 1.29 | -- | -- | -- | 0.971 | 19.7 | -- | -- | -- | -- |
| 341.61 | 0.861 | 5.36 | -- | -- | 3.07 | -- | -- | 0.252 | -- | 21.17 | 2253 | -- | -- |
| 643.57 | 1.18 | 5.2 | -- | -- | -- | -- | -- | 0.955 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 264.61 | temperature | 20 | 1440 | < th | dose independent | rect. | 21 | 9 |
| 2 | 264.93 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 9 |
| 42 | 268.89 | temperature | 20 | 1440 | > th | dose independent | sin | 9 | NA |
| 56 | 269.79 | temperature | 20 | 1440 | < th | dose independent | sin | 9 | NA |
| 98 | 272.00 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 14 |
| 102 | 272.12 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 6 |
| 121 | 272.69 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 7 |
| 122 | 272.71 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 4 |
| 159 | 273.31 | temperature | 20 | 4320 | > th | dose independent | rect. | 20 | 4 |
| 167 | 273.43 | temperature | 25 | 720 | < th | dose dependent | rect. | 21 | 19 |
| 189 | 273.75 | temperature | 25 | 1440 | < th | dose dependent | sin | 10 | NA |
| 222 | 274.21 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 1 |
| 281 | 275.05 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 493 | 278.08 | temperature | 15 | 1440 | > th | dose dependent | rect. | 23 | 5 |
| 524 | 278.56 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 547 | 278.81 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 548 | 278.82 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 1 |
| 563 | 278.93 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 574 | 279.02 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 757 | 280.67 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 1 |