BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0786700 Os01g0786700|J065061D03
(300 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G61740.1 | chr1:22798365-22801020 REVERSE LENGTH=459 147 6e-36
AT4G21250.1 | chr4:11325030-11326637 FORWARD LENGTH=450 129 2e-30
AT1G11540.1 | chr1:3875476-3876973 REVERSE LENGTH=368 129 2e-30
AT2G36630.1 | chr2:15352767-15355050 REVERSE LENGTH=460 101 4e-22
AT4G21260.1 | chr4:11327543-11329057 FORWARD LENGTH=394 101 5e-22
AT2G25737.1 | chr2:10977174-10979677 FORWARD LENGTH=477 94 9e-20
>AT1G61740.1 | chr1:22798365-22801020 REVERSE LENGTH=459
Length = 458
Score = 147 bits (371), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 82/175 (46%), Positives = 113/175 (64%), Gaps = 10/175 (5%)
Query: 30 YVPILNIVAGLSLKTATAFSTFMVTGGTLSNVLYTLIVLRGHEKGGHQPLIDYDIAVVSQ 89
YVPI+ IVAGL LKTA++FS FMVTGG+++NV L V + K G + LID+D+A++ +
Sbjct: 84 YVPIMTIVAGLDLKTASSFSAFMVTGGSIANVGCNLFV--RNPKSGGKTLIDFDLALLLE 141
Query: 90 PCLLLGVSVGVICNVMFPEWLITALFAVFLASATFKTYGTGMKRWRAETA-----AARRM 144
PC+LLGVS+GVICN++FP WLIT+LFAVFLA +T KT+G G+ WR E+ + R+
Sbjct: 142 PCMLLGVSIGVICNLVFPNWLITSLFAVFLAWSTLKTFGNGLYYWRLESEMVKIRESNRI 201
Query: 145 LEGGSSLGDGAGEALLGQKDGDGHRRQCVDLMVLVTIWLCFFVIHLFIG---GEG 196
E + + L + R + L VLV IWL +F ++L G GEG
Sbjct: 202 EEDDEEDKIESLKLPLLEDYQRPKRFPWIKLGVLVIIWLSYFAVYLLRGNKYGEG 256
Score = 94.0 bits (232), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 67/107 (62%)
Query: 194 GEGAKTASSTTMFMVLFCASMSMVQFIILGVDGIVTALVYAITCFVASIVGLVVIQGTIR 253
G + ++T FMVLF ++MS +Q+++LG++ TA ++A+ CFVAS+VGL V+Q I
Sbjct: 352 GIAPEVTAATCSFMVLFSSTMSAIQYLLLGMEHTGTASIFAVICFVASLVGLKVVQKVIT 411
Query: 254 KSGRVSLIVFMXXXXXXXXXXXXXCSGAVRVWVQYTSGQYMGFKMPC 300
+ GR S+IVF GA+ VW Y SG+YMGFK+PC
Sbjct: 412 EYGRASIIVFSVGIVMALSIVLMTSYGALDVWNDYVSGRYMGFKLPC 458
>AT4G21250.1 | chr4:11325030-11326637 FORWARD LENGTH=450
Length = 449
Score = 129 bits (324), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 78/178 (43%), Positives = 108/178 (60%), Gaps = 17/178 (9%)
Query: 30 YVPILNIVAGLSLKTATAFSTFMVTGGTLSNVLYTLIVLRGHEKGGHQPLIDYDIAVVSQ 89
++PI+ IVAG+ LKTA++FS FMVTGG+++NV+ L G + L+DYD+A++ +
Sbjct: 83 FIPIMTIVAGVDLKTASSFSAFMVTGGSIANVISNLF--------GGKALLDYDLALLLE 134
Query: 90 PCLLLGVSVGVICNVMFPEWLITALFAVFLASATFKTYGTGMKRWRAETAAARRMLEGGS 149
PC+LLGVS+GVICN + PEWLIT LFAVFLA ++ KT +G+K W+ E+ AR G
Sbjct: 135 PCMLLGVSIGVICNRVLPEWLITVLFAVFLAWSSLKTCRSGVKFWKLESEIARESGHGRP 194
Query: 150 SLGDGAGEA---------LLGQKDGDGHRRQCVDLMVLVTIWLCFFVIHLFIGGEGAK 198
G G E L Q + + L VLV +W FFVI+L G + K
Sbjct: 195 ERGQGQIEEETKNLKAPLLEAQATKNKSKIPWTKLGVLVIVWASFFVIYLLRGNKDGK 252
Score = 89.4 bits (220), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/111 (39%), Positives = 66/111 (59%)
Query: 190 LFIGGEGAKTASSTTMFMVLFCASMSMVQFIILGVDGIVTALVYAITCFVASIVGLVVIQ 249
L G + ++TT FMV F A+MS VQ+++LG+ TA V++ CF+AS++GLV++Q
Sbjct: 339 LLQSGIPPQITAATTSFMVFFSATMSAVQYLLLGMQNTDTAYVFSFICFLASLLGLVLVQ 398
Query: 250 GTIRKSGRVSLIVFMXXXXXXXXXXXXXCSGAVRVWVQYTSGQYMGFKMPC 300
+ + GR S+IVF GA+ VW Y +G+ MGFK+PC
Sbjct: 399 KAVAQFGRASIIVFSVGTVMSLSTVLMTSFGALDVWTDYVAGKDMGFKLPC 449
>AT1G11540.1 | chr1:3875476-3876973 REVERSE LENGTH=368
Length = 367
Score = 129 bits (323), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 76/167 (45%), Positives = 101/167 (60%), Gaps = 7/167 (4%)
Query: 34 LNIVAGLSLKTATAFSTFMVTGGTLSNVLYTLIVLRGHEKGGHQPLIDYDIAVVSQPCLL 93
+ I+AGL +KTA++FS FMVTG + +NV L LR + K + LID+D+A+ QPCLL
Sbjct: 1 MTIIAGLEMKTASSFSAFMVTGVSFANVGCNLF-LR-NPKSRDKTLIDFDLALTIQPCLL 58
Query: 94 LGVSVGVICNVMFPEWLITALFAVFLASATFKTYGTGMKRWRAETAAARRMLEGGSSLGD 153
LGVS+GVICN MFP WL+ LFAVFLA +T KT G+ W E+ A+ +
Sbjct: 59 LGVSIGVICNRMFPNWLVLFLFAVFLAWSTMKTCKKGVSYWNLESERAKIKSPRDVDGIE 118
Query: 154 GAGEALLGQKDGDGHRRQCV-----DLMVLVTIWLCFFVIHLFIGGE 195
A LL ++ D +R + L VLV IWL FF I+LF G +
Sbjct: 119 VARSPLLSEEREDVRQRGMIRFPWMKLGVLVIIWLLFFSINLFRGNK 165
Score = 94.4 bits (233), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 46/107 (42%), Positives = 67/107 (62%)
Query: 194 GEGAKTASSTTMFMVLFCASMSMVQFIILGVDGIVTALVYAITCFVASIVGLVVIQGTIR 253
G + ++T FMVLF +SMS +Q+++LG++ TA ++A+ CFVAS+VGL+V++ I
Sbjct: 261 GIAPEVTAATCSFMVLFSSSMSAIQYLLLGMEHAGTAAIFALVCFVASLVGLMVVKKVIA 320
Query: 254 KSGRVSLIVFMXXXXXXXXXXXXXCSGAVRVWVQYTSGQYMGFKMPC 300
K GR S+IVF GA VW + SG+YMGFK+PC
Sbjct: 321 KYGRASIIVFAVGIVMALSTVLMTTHGAFNVWNDFVSGRYMGFKLPC 367
>AT2G36630.1 | chr2:15352767-15355050 REVERSE LENGTH=460
Length = 459
Score = 101 bits (252), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 112/218 (51%), Gaps = 26/218 (11%)
Query: 30 YVPILNIVAGLSLKTATAFSTFMVTGGTLSNVLYTLIVLRGHEKGGHQPLIDYDIAVVSQ 89
+VP+L ++ G K+A A S M+ G + S+V Y + R P++DYD+A++ Q
Sbjct: 85 FVPMLTLILGFDTKSAAAISKCMIMGASASSVWYNV---RVRHPTKEVPILDYDLALLFQ 141
Query: 90 PCLLLGVSVGVICNVMFPEWLITALFAVFLASATFKTYGTGMKRWRAETAAARRMLEGGS 149
P LLLG++VGV +V+FP WLIT L + + +++ G++ W+ ET M + +
Sbjct: 142 PMLLLGITVGVSLSVVFPYWLITVLIIILFVGTSSRSFFKGIEMWKEETLLKNEMAQQRA 201
Query: 150 SLGDGAGEALLGQKDGDGHRRQCVD-------------LMVLVTIWLCFFVIHLFIGGEG 196
++ + GE L+ + + R+ L++LVT+WL F +I +
Sbjct: 202 NMVNSRGELLIDTEYEPLYPREEKSELEIIRSNLKWKGLLILVTVWLTFLLIQIV----K 257
Query: 197 AKTASSTTMFMVLFCASMSMVQF-IILGVDGIVTALVY 233
+ +T++ +LF +VQF + L V G + +Y
Sbjct: 258 NEIKVCSTIYWILF-----IVQFPVALAVFGFEASKLY 290
>AT4G21260.1 | chr4:11327543-11329057 FORWARD LENGTH=394
Length = 393
Score = 101 bits (251), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 69/98 (70%), Gaps = 8/98 (8%)
Query: 38 AGLSLKTATAFSTFMVTGGTLSNVLYTLIVLRGHEKGGHQPLIDYDIAVVSQPCLLLGVS 97
+G+ LK A++FS FMVTGG+++N++ + G + LIDYD+A++ +PC+LLGVS
Sbjct: 79 SGIDLKAASSFSAFMVTGGSIANLI--------NNHFGCKKLIDYDLALLLEPCMLLGVS 130
Query: 98 VGVICNVMFPEWLITALFAVFLASATFKTYGTGMKRWR 135
VGVICN +FPEWLIT LF VFL ++ +T G W+
Sbjct: 131 VGVICNKVFPEWLITGLFVVFLMWSSMETCENGHTSWK 168
Score = 67.8 bits (164), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 59/111 (53%)
Query: 190 LFIGGEGAKTASSTTMFMVLFCASMSMVQFIILGVDGIVTALVYAITCFVASIVGLVVIQ 249
L G + ++TT FMV F A+MS VQ+++LG+ A V+++ CF AS +GLV Q
Sbjct: 283 LLRAGIPPQVTAATTSFMVFFSATMSGVQYLLLGMQNTEAAYVFSVICFFASTLGLVFAQ 342
Query: 250 GTIRKSGRVSLIVFMXXXXXXXXXXXXXCSGAVRVWVQYTSGQYMGFKMPC 300
+ R S+IVF+ G + ++ +G+ +GF++PC
Sbjct: 343 KVVPHFRRASIIVFLVGTMMYLTTIVMASFGILVFYIDNDAGKDIGFQLPC 393
>AT2G25737.1 | chr2:10977174-10979677 FORWARD LENGTH=477
Length = 476
Score = 94.0 bits (232), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 57/176 (32%), Positives = 89/176 (50%), Gaps = 18/176 (10%)
Query: 30 YVPILNIVAGLSLKTATAFSTFMVTGGTLSNVLYTLIVLRGHEKGGHQPLIDYDIAVVSQ 89
+VP+L+++ G K+ATA S M+ G ++S V Y L R P+IDYD+A++ Q
Sbjct: 105 FVPMLSLIIGFDPKSATAISKCMIMGASVSTVYYNL---RLRHPTLDMPIIDYDLALLIQ 161
Query: 90 PCLLLGVSVGVICNVMFPEWLITALFAVFLASATFKTYGTGMKRWRAET----AAARRML 145
P L+LG+S+GV NV+FP+WL+T L V + K + G + W ET AA+R+
Sbjct: 162 PMLMLGISIGVAFNVIFPDWLVTVLLIVLFLGTSTKAFLKGSETWNKETIEKKEAAKRLE 221
Query: 146 EGGSSLGD-------GAGEALLGQKDGDG----HRRQCVDLMVLVTIWLCFFVIHL 190
G S + A G K + +L +LV +W+ F + +
Sbjct: 222 SNGVSGTEVEYVPLPAAPSTNPGNKKKEEVSIIENVYWKELGLLVFVWIVFLALQI 277
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.329 0.141 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,338,737
Number of extensions: 202893
Number of successful extensions: 592
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 579
Number of HSP's successfully gapped: 10
Length of query: 300
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 202
Effective length of database: 8,419,801
Effective search space: 1700799802
Effective search space used: 1700799802
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 111 (47.4 bits)