Os01g0780800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SAND domain containing protein.
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Os01g0780800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SAND domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 109.63 | 0.492 | 8.61 | -2.01 | 0.813 | -1.52 | -1.93 | 0.0784 | -0.4 | 1.24 | 10.06 | 261 | -- | -- |
| 109.64 | 0.488 | 8.61 | -2.02 | 0.813 | -1.52 | -1.94 | -- | -0.403 | 1.25 | 10.36 | 260 | -- | -- |
| 120.43 | 0.511 | 8.56 | -1.63 | 0.82 | -1.39 | -- | 2.64 | -0.322 | 2.44 | 8.265 | 109 | -- | -- |
| 124.42 | 0.52 | 8.61 | -1.99 | 0.854 | -1.34 | -- | -- | -0.421 | 1.85 | 6.094 | 252 | -- | -- |
| 144.14 | 0.559 | 8.51 | -1.37 | -- | -1.94 | -- | 2.85 | -0.143 | -- | 18.96 | 87 | -- | -- |
| 133.97 | 0.543 | 8.65 | -2.33 | 1.17 | -- | -1.66 | -- | -0.618 | 2.32 | -- | -- | -- | -- |
| 143.5 | 0.561 | 8.65 | -2.28 | 1.18 | -- | -- | -- | -0.61 | 2.68 | -- | -- | -- | -- |
| 152.04 | 0.574 | 8.57 | -1.83 | -- | -1.96 | -- | -- | -0.285 | -- | 17.31 | 105 | -- | -- |
| 218.29 | 0.688 | 8.54 | -- | 0.639 | -2.31 | -- | -- | -0.0839 | 0.69 | 6.201 | 249 | -- | -- |
| 224.48 | 0.7 | 8.64 | -2.23 | -- | -- | -- | -- | -0.58 | -- | -- | -- | -- | -- |
| 280.8 | 0.784 | 8.59 | -- | 1.13 | -- | -- | -- | -0.355 | 2.66 | -- | -- | -- | -- |
| 232.31 | 0.71 | 8.51 | -- | -- | -2.84 | -- | -- | -0.0185 | -- | 13.17 | 105 | -- | -- |
| 355.92 | 0.881 | 8.58 | -- | -- | -- | -- | -- | -0.332 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 101.29 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 19 |
| 72 | 106.92 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 108 | 108.14 | temperature | 15 | 10 | > th | dose dependent | sin | 18 | NA |
| 109 | 108.17 | temperature | 15 | 90 | > th | dose dependent | sin | 19 | NA |
| 128 | 108.53 | temperature | 15 | 10 | > th | dose dependent | rect. | 7 | 22 |
| 161 | 109.06 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 12 |
| 164 | 109.10 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 180 | 109.30 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 212 | 109.66 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 238 | 109.99 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 247 | 110.04 | temperature | 15 | 270 | > th | dose dependent | rect. | 13 | 23 |
| 248 | 110.06 | temperature | 30 | 270 | < th | dose independent | sin | 11 | NA |
| 253 | 110.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 18 |
| 274 | 110.34 | temperature | 30 | 270 | < th | dose dependent | rect. | 12 | 22 |
| 307 | 110.65 | temperature | 15 | 270 | > th | dose dependent | rect. | 20 | 23 |
| 386 | 111.25 | temperature | 20 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 410 | 111.43 | temperature | 30 | 10 | < th | dose dependent | sin | 17 | NA |
| 428 | 111.55 | temperature | 10 | 720 | > th | dose dependent | sin | 1 | NA |
| 462 | 111.77 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 482 | 111.91 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 22 |
| 507 | 112.02 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 19 |
| 518 | 112.11 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 12 |
| 555 | 112.32 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 22 |
| 559 | 112.34 | temperature | 25 | 270 | < th | dose independent | rect. | 10 | 23 |
| 590 | 112.47 | temperature | 30 | 270 | < th | dose independent | rect. | 13 | 10 |
| 602 | 112.56 | temperature | 30 | 270 | < th | dose independent | rect. | 16 | 15 |
| 608 | 112.58 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 6 |
| 613 | 112.60 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 642 | 112.77 | temperature | 25 | 270 | > th | dose independent | rect. | 10 | 23 |
| 734 | 113.14 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 16 |
| 738 | 113.15 | temperature | 25 | 270 | < th | dose independent | rect. | 14 | 23 |
| 746 | 113.17 | temperature | 30 | 270 | < th | dose independent | rect. | 11 | 11 |
| 750 | 113.18 | temperature | 25 | 270 | > th | dose independent | rect. | 21 | 22 |
| 753 | 113.19 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 774 | 113.25 | temperature | 25 | 90 | > th | dose independent | sin | 20 | NA |
| 782 | 113.26 | temperature | 30 | 270 | < th | dose independent | sin | 21 | NA |
| 795 | 113.31 | temperature | 25 | 270 | < th | dose independent | no | NA | NA |
| 820 | 113.41 | temperature | 15 | 10 | > th | dose dependent | rect. | 8 | 12 |
| 877 | 113.58 | temperature | 30 | 720 | < th | dose independent | sin | 2 | NA |
| 955 | 113.80 | temperature | 15 | 10 | > th | dose dependent | rect. | 16 | 12 |