BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0780800 Os01g0780800|AK064375
(235 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G28190.2 | chr4:13985753-13987050 FORWARD LENGTH=269 305 1e-83
AT2G20825.1 | chr2:8965845-8966795 REVERSE LENGTH=229 304 3e-83
>AT4G28190.2 | chr4:13985753-13987050 FORWARD LENGTH=269
Length = 268
Score = 305 bits (781), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 147/254 (57%), Positives = 182/254 (71%), Gaps = 31/254 (12%)
Query: 12 LFSEEELRDVSGVRRCEDFVEVTCGCTSHRYGDAVGRLRVYASGDLEVSCECTPGCRE-- 69
LF +EEL+++SGV D+VEV CGCTSHRYGDAV RLRV+ +GDLE++CECTPGC E
Sbjct: 14 LFKQEELQEMSGVNVGGDYVEVMCGCTSHRYGDAVARLRVFPTGDLEITCECTPGCDEGL 73
Query: 70 -----------------------------DKLTPSAFEKHSGRETAGKWRNTVWVMVQGE 100
DKLTP+AFEKHSGRETA KW+N VWV++ GE
Sbjct: 74 SFFVSTVSFSCLSDAFGKMGFDFFDCMMLDKLTPAAFEKHSGRETARKWKNNVWVIIGGE 133
Query: 101 KVPLSKTALLKYYSLSHKSANGSNKGRNGRLSHRDEFIHCTECGKERRFRLRSKEECRIY 160
KVPLSKT LLKYY+ S K + SN+ + ++ HRDEF+ C +CGKERRFRLRS++ECR++
Sbjct: 134 KVPLSKTVLLKYYNESSKKCSRSNRSQGAKVCHRDEFVGCNDCGKERRFRLRSRDECRLH 193
Query: 161 HDALAKPNWTCADLTTDRVTCGDEEERASRKVLRGCSRSTSCTGCVKCVCFGCEICRFTD 220
H+A+ PNW C+D D++TC +EEER SRKV RGC+RS SC GC CVCFGCE+CRF++
Sbjct: 194 HNAMGDPNWKCSDFPYDKITCEEEEERGSRKVYRGCTRSPSCKGCTSCVCFGCELCRFSE 253
Query: 221 CGCQTCVDFYHNSK 234
C CQTCVDF N K
Sbjct: 254 CTCQTCVDFTSNVK 267
>AT2G20825.1 | chr2:8965845-8966795 REVERSE LENGTH=229
Length = 228
Score = 304 bits (778), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 138/223 (61%), Positives = 181/223 (81%), Gaps = 6/223 (2%)
Query: 12 LFSEEELRDVSGVRRCEDFVEVTCGCTSHRYGDAVGRLRVYASGDLEVSCECTPGCREDK 71
LFS+EEL+++SGV +D+VEV CGCTSHRYGDAV RL++++ G+L+++C+CTP C EDK
Sbjct: 10 LFSKEELQEISGVHVGDDYVEVMCGCTSHRYGDAVARLKIFSDGELQITCQCTPACLEDK 69
Query: 72 LTPSAFEKHSGRETAGKWRNTVWVMVQGEKVPLSKTALLKYYSLSHKSANGSNKGRNGRL 131
LTP+AFEKHS RET+ WRN VWV ++G+KVPLSKT LL+YY+ + K++N S ++
Sbjct: 70 LTPAAFEKHSERETSRNWRNNVWVFIEGDKVPLSKTVLLRYYNKALKNSNVS------KV 123
Query: 132 SHRDEFIHCTECGKERRFRLRSKEECRIYHDALAKPNWTCADLTTDRVTCGDEEERASRK 191
HRDEF+ C+ CGKERRFRLRS+ ECR++HDA+A+PNW C D D++TC +EEER SRK
Sbjct: 124 IHRDEFVGCSTCGKERRFRLRSRGECRMHHDAIAEPNWKCCDYPYDKITCEEEEERGSRK 183
Query: 192 VLRGCSRSTSCTGCVKCVCFGCEICRFTDCGCQTCVDFYHNSK 234
V RGC+RS SC GC CVCFGC++CRF+DC CQTC+DF N+K
Sbjct: 184 VFRGCTRSPSCKGCTSCVCFGCKLCRFSDCNCQTCLDFTTNAK 226
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.322 0.135 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,508,203
Number of extensions: 228344
Number of successful extensions: 556
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 555
Number of HSP's successfully gapped: 3
Length of query: 235
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 140
Effective length of database: 8,502,049
Effective search space: 1190286860
Effective search space used: 1190286860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 110 (47.0 bits)