BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0780800 Os01g0780800|AK064375
(235 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0780800 SAND domain containing protein 457 e-129
Os05g0502700 311 4e-85
>Os01g0780800 SAND domain containing protein
Length = 235
Score = 457 bits (1175), Expect = e-129, Method: Compositional matrix adjust.
Identities = 224/224 (100%), Positives = 224/224 (100%)
Query: 12 LFSEEELRDVSGVRRCEDFVEVTCGCTSHRYGDAVGRLRVYASGDLEVSCECTPGCREDK 71
LFSEEELRDVSGVRRCEDFVEVTCGCTSHRYGDAVGRLRVYASGDLEVSCECTPGCREDK
Sbjct: 12 LFSEEELRDVSGVRRCEDFVEVTCGCTSHRYGDAVGRLRVYASGDLEVSCECTPGCREDK 71
Query: 72 LTPSAFEKHSGRETAGKWRNTVWVMVQGEKVPLSKTALLKYYSLSHKSANGSNKGRNGRL 131
LTPSAFEKHSGRETAGKWRNTVWVMVQGEKVPLSKTALLKYYSLSHKSANGSNKGRNGRL
Sbjct: 72 LTPSAFEKHSGRETAGKWRNTVWVMVQGEKVPLSKTALLKYYSLSHKSANGSNKGRNGRL 131
Query: 132 SHRDEFIHCTECGKERRFRLRSKEECRIYHDALAKPNWTCADLTTDRVTCGDEEERASRK 191
SHRDEFIHCTECGKERRFRLRSKEECRIYHDALAKPNWTCADLTTDRVTCGDEEERASRK
Sbjct: 132 SHRDEFIHCTECGKERRFRLRSKEECRIYHDALAKPNWTCADLTTDRVTCGDEEERASRK 191
Query: 192 VLRGCSRSTSCTGCVKCVCFGCEICRFTDCGCQTCVDFYHNSKE 235
VLRGCSRSTSCTGCVKCVCFGCEICRFTDCGCQTCVDFYHNSKE
Sbjct: 192 VLRGCSRSTSCTGCVKCVCFGCEICRFTDCGCQTCVDFYHNSKE 235
>Os05g0502700
Length = 239
Score = 311 bits (796), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 152/224 (67%), Positives = 182/224 (81%), Gaps = 6/224 (2%)
Query: 12 LFSEEELRDVSGVRRCEDFVEVTCGCTSHRYGDAVGRLRVYASGDLEVSCECTPGCREDK 71
LF EEELRDVSGVR + FVEVTCGCTS RYGDAVGRLR++ASG+L+VSC+CTPGC +DK
Sbjct: 9 LFGEEELRDVSGVRVGDRFVEVTCGCTSARYGDAVGRLRLFASGELQVSCDCTPGCDQDK 68
Query: 72 LTPSAFEKHSGRETAGKWRNTVWVMVQGEKVPLSKTALLKYYSLSHKSANGSNKGRNGRL 131
L+P+AFEKHSGRETAG+W+NTVWVMV+G+KV LSKT LL+YY KS++ + GR
Sbjct: 69 LSPAAFEKHSGRETAGRWQNTVWVMVKGDKVALSKTCLLRYYHKKLKSSSANGGGRRP-P 127
Query: 132 SHRDEFIHCTECGKERRFRLRSKEECRIYHDALAKPNWTCADLTTD-----RVTCGDEEE 186
HRDEF+ C CGKERRFRLR+KEECR+YHDA+A+ +WTC D+ RV+C +EEE
Sbjct: 128 CHRDEFVRCAGCGKERRFRLRTKEECRLYHDAMARHDWTCKDMPPAGRCRVRVSCEEEEE 187
Query: 187 RASRKVLRGCSRSTSCTGCVKCVCFGCEICRFTDCGCQTCVDFY 230
RASRK RGC+R+ +C GCV+CVCFGCE CRF C CQTCVDFY
Sbjct: 188 RASRKASRGCTRAATCKGCVRCVCFGCETCRFAGCACQTCVDFY 231
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.322 0.135 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,560,653
Number of extensions: 354315
Number of successful extensions: 927
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 925
Number of HSP's successfully gapped: 2
Length of query: 235
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 137
Effective length of database: 11,918,829
Effective search space: 1632879573
Effective search space used: 1632879573
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 154 (63.9 bits)