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Os01g0772700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Armadillo-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.22 (0.0145) R2 : 0.274
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.401 (0.0306) R2dN8 : 0.353 R2N8 : 0.274
σ : 0.274
deviance : 34.38
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
27.43 0.246 9.21 0.226 0.222 -0.587 -0.313 2.17 0.372 23.6 30.4 301 -- --
27.65 0.245 9.22 0.0848 0.227 -0.348 -0.285 -- 0.391 23.4 30.4 332 -- --
27.84 0.246 9.21 0.243 0.226 -0.6 -- 2.21 0.373 23.3 30.5 320 -- --
28 0.246 9.23 0.0758 0.226 -0.36 -- -- 0.374 23.3 30.6 320 -- --
30.94 0.259 9.21 0.241 -- -0.553 -- 1.87 0.389 -- 30.4 246 -- --
30.36 0.258 9.22 0.02 0.24 -- -0.303 -- 0.399 0.945 -- -- -- --
30.74 0.26 9.22 0.0308 0.241 -- -- -- 0.401 1.05 -- -- -- --
30.83 0.259 9.22 0.0856 -- -0.326 -- -- 0.392 -- 29.78 171 -- --
28.14 0.247 9.23 -- 0.227 -0.349 -- -- 0.366 23.4 30.61 318 -- --
34.34 0.274 9.22 0.0399 -- -- -- -- 0.405 -- -- -- -- --
30.77 0.259 9.22 -- 0.241 -- -- -- 0.397 1.06 -- -- -- --
31.03 0.259 9.22 -- -- -0.316 -- -- 0.385 -- 29.8 171 -- --
34.38 0.274 9.22 -- -- -- -- -- 0.401 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 27.19 radiation 10 1440 > th dose independent rect. 11 3
2 27.22 atmosphere 1005 270 > th dose dependent rect. 23 7
8 27.43 radiation 1 1440 < th dose independent rect. 12 1
10 27.43 radiation 1 1440 < th dose dependent rect. 12 1
16 27.48 atmosphere 1005 90 > th dose dependent rect. 23 10
17 27.51 temperature 30 270 < th dose independent rect. 9 23
21 27.54 temperature 30 270 > th dose independent rect. 14 23
29 27.58 temperature 30 270 < th dose independent rect. 5 14
30 27.58 temperature 15 30 > th dose independent rect. 5 23
34 27.62 temperature 30 270 < th dose independent rect. 24 23
36 27.63 radiation 20 1440 < th dose dependent rect. 11 3
37 27.65 temperature 30 270 < th dose independent rect. 21 23
39 27.66 temperature 30 270 > th dose independent rect. 15 1
41 27.66 wind 9 14400 > th dose dependent rect. 11 1
43 27.66 temperature 30 270 > th dose dependent rect. 16 21
48 27.68 radiation 20 1440 < th dose dependent rect. 11 1
59 27.71 radiation 10 1440 > th dose independent rect. 11 20
69 27.75 wind 9 4320 < th dose independent rect. 18 1
85 27.77 temperature 30 270 < th dose independent sin 21 NA
87 27.77 temperature 30 30 < th dose independent rect. 5 23
94 27.78 temperature 30 720 < th dose independent rect. 5 7
98 27.78 temperature 30 270 > th dose independent rect. 9 10
123 27.78 wind 5 4320 < th dose dependent rect. 21 1
125 27.79 temperature 30 270 > th dose independent no NA NA
128 27.79 temperature 30 720 < th dose independent rect. 3 9
236 27.80 temperature 30 270 < th dose independent rect. 9 11
237 27.80 temperature 30 270 < th dose independent rect. 11 23
244 27.82 temperature 30 270 > th dose independent sin 21 NA
246 27.82 wind 9 14400 < th dose independent rect. 11 1
247 27.82 temperature 30 720 > th dose independent rect. 9 2
251 27.83 temperature 30 270 < th dose independent no NA NA
258 27.84 temperature 30 270 > th dose independent rect. 18 23
259 27.84 temperature 30 270 > th dose dependent no NA NA
261 27.84 temperature 30 270 > th dose dependent rect. 9 10
371 27.85 wind 7 1440 > th dose dependent rect. 15 1
396 27.86 wind 9 4320 > th dose dependent rect. 18 2
437 27.87 temperature 30 270 > th dose dependent sin 23 NA
483 27.90 atmosphere 1010 720 < th dose independent rect. 22 1
490 27.90 temperature 30 270 < th dose independent rect. 14 23
515 27.92 temperature 30 720 < th dose independent rect. 21 16
518 27.92 temperature 30 270 > th dose dependent sin 10 NA
548 27.93 humidity 60 30 > th dose dependent rect. 5 23
549 27.94 atmosphere 1010 720 < th dose independent rect. 18 6
554 27.94 temperature 30 720 > th dose dependent rect. 9 3
564 27.94 radiation 10 1440 < th dose dependent rect. 10 14
608 27.95 temperature 30 720 > th dose dependent rect. 10 1
635 27.96 wind 9 14400 > th dose independent rect. 11 1
655 27.96 temperature 30 270 < th dose independent rect. 5 23
662 27.97 temperature 30 720 > th dose independent sin 8 NA
664 27.97 radiation 10 1440 > th dose independent sin 21 NA
691 27.98 temperature 30 270 > th dose independent rect. 14 5
734 27.99 temperature 30 720 < th dose independent sin 6 NA
736 27.99 humidity 90 14400 > th dose independent rect. 5 1
761 28.00 temperature 30 270 < th dose independent rect. 18 23
778 28.01 radiation 1 720 > th dose independent rect. 17 14
814 28.02 temperature 30 720 < th dose independent rect. 23 14
833 28.03 temperature 30 720 < th dose independent rect. 18 18
846 28.04 radiation 10 1440 > th dose independent rect. 6 9
914 28.05 radiation 1 14400 < th dose dependent rect. 20 9
941 28.07 wind 7 1440 > th dose independent rect. 15 3
977 28.08 temperature 25 1440 > th dose dependent rect. 17 9