BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0772700 Os01g0772700|Os01g0772700
(1267 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G27970.2 | chr5:10004720-10015619 FORWARD LENGTH=1659 638 0.0
AT3G60860.1 | chr3:22484804-22491510 FORWARD LENGTH=1794 76 1e-13
AT3G43300.1 | chr3:15234235-15245034 REVERSE LENGTH=1759 66 1e-10
>AT5G27970.2 | chr5:10004720-10015619 FORWARD LENGTH=1659
Length = 1658
Score = 638 bits (1646), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 331/635 (52%), Positives = 431/635 (67%), Gaps = 29/635 (4%)
Query: 522 IFKRKKAVTDASEKDLISLGFQSIRVIMNEGLATIPVQCLDECILVTGAYGTQKTDINIS 581
I + ++V DASEKD+ +LGFQS+RVIM++GL T+P CL CI VTGAY QKTD+NIS
Sbjct: 857 ILEMLRSVADASEKDVATLGFQSLRVIMSDGLPTLPEDCLHVCIDVTGAYSAQKTDLNIS 916
Query: 582 LTAVGLLWTATDFVVKGLISKS-AEKANGMDE-----EAESGGTVKEEALSSSEKDIKQS 635
LTA+GLLWT TDFV KGL S EK +G + + +G ++ S+S K ++
Sbjct: 917 LTAIGLLWTLTDFVAKGLHHGSLVEKGSGFNNADSTPQQTNGEDGEKHMGSNSGKSDYEA 976
Query: 636 PLKSVVDYNKLFFSVFSVLQKLGADDRPEVRNSAVRTLFQTLSTHGQKLSKTMWEDCLWI 695
P++ VV++ KL F VFS++QKL D+RPEVRNSAVRT FQ L +HG KLSK+MWEDCLW
Sbjct: 977 PIQ-VVNHEKLLFLVFSLIQKLVDDERPEVRNSAVRTFFQILGSHGNKLSKSMWEDCLWN 1035
Query: 696 YVFPMLERVSHLASTSSRDEWQGKELGTRAGKAVHMLIHHSRNTAQKQWDETIVLVLGGI 755
Y+FPML+ SH A+TSS+DEWQGKE+GTR GKAVHMLIHHSRN+AQKQWDET VLVLGGI
Sbjct: 1036 YIFPMLDGASHKAATSSKDEWQGKEIGTRGGKAVHMLIHHSRNSAQKQWDETFVLVLGGI 1095
Query: 756 ARLLRSFFPFLQQLSKFSSGWVLLLDFVKNGILNGSKEVALAAINCLQTFVGSNCSKGNL 815
ARL RS+FP L+ L F SGW LL FVK I NGSKEV+LAAINCLQT V S+C KGNL
Sbjct: 1096 ARLFRSYFPLLESLPNFWSGWESLLAFVKKSIFNGSKEVSLAAINCLQTAVVSHCVKGNL 1155
Query: 816 ESSYVKSVLDIYELVLQTSPNYKNDSADKVKQEVLRGLGDLYVQAQSLFNDEMYLRLMAV 875
+ Y+ SVLD+YELV Q S +Y D+A KVKQE+L GLG+LYVQ+ +F+D+MY++L+ +
Sbjct: 1156 QLRYLNSVLDVYELVFQKSSSYTGDTAAKVKQEILHGLGELYVQSSKMFDDKMYMQLLGI 1215
Query: 876 MHLMIKSS-MNPTDYDNELGSIPALQRGILEIIPMLRPTTMLSSMWSPLLLELLCYLNSH 934
+ L IK + +N +++ E G +P + R +LEI+P L P LSSMW LL E L YL
Sbjct: 1216 VDLAIKQAIINSENFETEYGHVPPVLRHVLEILPSLGPPEHLSSMWLILLREFLHYLPRV 1275
Query: 935 DTPL-QKQGKEMHEQKSDAANGATHGFLERSHLNNSSTKMDNAVGCGWGIMFIEKLVPIV 993
D+ L +G E+ EQK+DA++ +T++ MF EKL+P +
Sbjct: 1276 DSVLPNDEGSEVLEQKADASSETI-----------PTTRITTN-------MFAEKLIPAL 1317
Query: 994 VNLFLEAPQNERFNSSPEVIRCLGRCMNTRRDNPKGTLWRVSAECFNRVLVDEVTHDSAD 1053
+ L L+AP E++ PEVI+ L RCM TRRDNP G+LW+V+AE FNR+LV++V S
Sbjct: 1318 IELLLQAPAVEKYILFPEVIQNLRRCMMTRRDNPDGSLWKVAAEGFNRLLVEDVKLCSVG 1377
Query: 1054 CKSGMSSYKFSRARFWKEVADVYETFLVGSCGRXXXXXXXXXXXXTADETLEMAVLTVFG 1113
++ + K +R R WKE+ DVY+ FLVG CGR A+ETLE+A+L G
Sbjct: 1378 GETELKISKTARIRIWKEIGDVYDIFLVGYCGRALSSNSLPAATLKANETLEIALLNGLG 1437
Query: 1114 DNVLKLQKDAPVELYIGDKLMCYSIRNQQREGPLP 1148
D +LK DAP E+ ++L+ R R LP
Sbjct: 1438 DIILKSTVDAPREVL--ERLVSTLDRCASRTCSLP 1470
Score = 259 bits (661), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 176/335 (52%), Positives = 212/335 (63%), Gaps = 52/335 (15%)
Query: 1 MAFMAALEADLRALSAEARRRHPSVKDAAEHAILKLRSLSSPMEIAQNEDILRMFLVACS 60
MA +AALEADLRALSAEARRR+P+VKD AEHAILKLRS SS +++ NEDILR+FL+AC
Sbjct: 1 MALVAALEADLRALSAEARRRYPAVKDGAEHAILKLRSSSSASDLSSNEDILRIFLMACG 60
Query: 61 VKSVKLSVIGLSCLQKLISHDAVASSALKDILTTLKDHAEMTDEIVQLKTLQTILIIFQS 120
V++ KLSVIGLSCLQKLISHDAV S+LK+IL TLKDH+EM +E +QLKTLQTILIIFQS
Sbjct: 61 VRNTKLSVIGLSCLQKLISHDAVEPSSLKEILYTLKDHSEMAEENIQLKTLQTILIIFQS 120
Query: 121 HLQPESE-----------LPLDQSEASPVIKKAPRLLAIIKQLVTAVNMSQAFDICLHLL 169
L PE+E LD + V A A +Q V + L +
Sbjct: 121 RLHPETEDNMVLGLSICLTLLDNNRPPSVYNTAA---ATFRQAVALIFDQVVSAESLPMP 177
Query: 170 ESNRSSDSVRK-------SLGRNSVEP----------TVREKLSNVGKLGLRLLEDLTAL 212
+ SS + R S N+ P T+R+ LS GKLGLRLLEDLTA
Sbjct: 178 KFGSSSQTARTGSVTGDLSQNINNSGPLEKDVIGGRLTIRDTLSETGKLGLRLLEDLTAS 237
Query: 213 AAGGSATWLRVYSLHRTFALDILD--MNARISKLAVLMP---VL---------------- 251
AAGGSA WL V SL RTF+L++++ ++ IS +L+P VL
Sbjct: 238 AAGGSAAWLHVTSLPRTFSLELIEFVLSNYISVFKILLPYEQVLRHQICSLLMTSLRTSS 297
Query: 252 ELEGEAGEPAFRRLVLRLVAHVIRLYSSSLVTESE 286
ELEGE EP FRRLVLR VAH+IRLYSSSL+TE E
Sbjct: 298 ELEGEMVEPYFRRLVLRSVAHIIRLYSSSLITECE 332
Score = 206 bits (523), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 100/136 (73%), Positives = 118/136 (86%), Gaps = 1/136 (0%)
Query: 357 EACGVLRAIEPLNSFLASLCKFTINNPNEGEKRS-IVLSPGSKKVEMLVDQRDSIILTPK 415
+ACGVL A+EPLNSFLASLCKFTI P + E++S +V SP SK+ E+ VD +D I+LTPK
Sbjct: 547 QACGVLHAVEPLNSFLASLCKFTIVLPTDVERKSSVVQSPVSKRSEVQVDLKDVIVLTPK 606
Query: 416 NVQALRTLFNVAHRLHNVLGPSWVLVLETLAALDRAIHSPHASTQEVSASVSRLSRDTSG 475
NVQALRTLFN+AHRLHNVLGPSWVLVLETLAALDRAIHSPHA+TQEV+ +V +L+R+ S
Sbjct: 607 NVQALRTLFNIAHRLHNVLGPSWVLVLETLAALDRAIHSPHATTQEVATAVPKLTREPSR 666
Query: 476 QYSDFHILSSLNSQPF 491
QY+DF ILSSLNSQ F
Sbjct: 667 QYADFSILSSLNSQLF 682
Score = 121 bits (303), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/77 (77%), Positives = 70/77 (90%)
Query: 281 LVTESEASDLSEETLAAVAGMFSSKAKGIEWSMDNDASNAAVLVASEAHTITLALEGLLG 340
+V+ + + SEE+LAAVAGMFSSKAKGIEW +DNDAS+AAVLVASEAH ITLA+EGLLG
Sbjct: 409 VVSSIQFQETSEESLAAVAGMFSSKAKGIEWILDNDASSAAVLVASEAHAITLAIEGLLG 468
Query: 341 VVFTIATLTDEALDVGE 357
VVFT+ATLTDEA+DVGE
Sbjct: 469 VVFTVATLTDEAVDVGE 485
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 44/72 (61%)
Query: 1146 PLPSVRIDETICVLQELARLIINMETANALSMPLYLKEALEKNESHGRAHLLALLPTFSE 1205
P+P+ R++E I LQEL RL I+ E A+ L + YLK L ++ RAHLL L P+ E
Sbjct: 1542 PIPTARLEEIIFTLQELYRLSIHPEVASVLPLQPYLKNVLREDNRDTRAHLLVLFPSLCE 1601
Query: 1206 LVVSSPYQLIEF 1217
+V+S ++ E
Sbjct: 1602 IVLSREMRVREL 1613
>AT3G60860.1 | chr3:22484804-22491510 FORWARD LENGTH=1794
Length = 1793
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 117/261 (44%), Gaps = 35/261 (13%)
Query: 535 KDLISLGFQSIRVIMNEGLATIPVQCLD---ECILVTGAYGTQKTDINISLTAVGLL-WT 590
K+++ L F+ I I+ E I +C+ A+ + +ISL+++ L +
Sbjct: 1237 KNIVFLSFEIIEKIIREYFPYITETETTTFTDCVNCLVAFTNNRFSKDISLSSIAFLRYC 1296
Query: 591 ATDFVVKGLISKSAEKANGMDEEAESGGTVKEEALSSSEKDIKQSPLKSVVDYNKLFF-- 648
AT L S S K G + G + + +L S + +++ +V+ N L+F
Sbjct: 1297 ATKLAEGDLNSPSTNKYKG------TSGKIPQSSLHSGKSGKQEN--GEIVNNNHLYFWF 1348
Query: 649 SVFSVLQKLGADDRPEVRNSAVRTLFQTLSTHGQKLSKTMWEDCLWIYVFPMLERVSHLA 708
+ S L +L D RPE+R SA++ +F TL HG S +WE +FP+ + V H
Sbjct: 1349 PLLSGLSELSFDPRPEIRKSALQIMFDTLRNHGHLFSLPLWEKVFESVLFPIFDYVRHSI 1408
Query: 709 STSSRDEWQGKELGTRAGKAVHMLIHHSRNTAQKQW-DETIVLVLGGIARLLRSFF---- 763
S DE + G+ G+ V L H + W ET L L + L F+
Sbjct: 1409 DPSGEDE--SADQGSSGGE-VDELDHDA-------WLYETCTLALQLVVDLFVKFYTTVN 1458
Query: 764 PFLQQLSKFSSGWVLLLDFVK 784
P L+++ +LL+ F+K
Sbjct: 1459 PLLEKV------LMLLVSFIK 1473
>AT3G43300.1 | chr3:15234235-15245034 REVERSE LENGTH=1759
Length = 1758
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 77/190 (40%), Gaps = 24/190 (12%)
Query: 522 IFKRKKAVTDASEKDLISLGFQSIRVIMNEGLATIPVQCLDECILVTGAYGTQKTDINIS 581
+F A D + ++ F+++ ++ E + C +C+ + K IS
Sbjct: 1150 VFMIFTAAADDEVESIVEKSFENVEQVILEHFDQVIGDCFMDCVNCLIRFANNKASDRIS 1209
Query: 582 LTAVGLLWTATDFVVKGLISKSAEKANGMDEEAESGGTVKEEALSSSEKDIKQSPLKSVV 641
L A+ LL D + +GLI GG +K D + V
Sbjct: 1210 LKAIALLRICEDRLAEGLIP---------------GGVLKP-------VDGNEDETFDVT 1247
Query: 642 DYNKLFFSVFSVLQKLGADDRPEVRNSAVRTLFQTLSTHGQKLSKTMWEDCLWIYVFPML 701
++ +F + + L L +D RPEVRN A+ LF L+ G K S WE +FP+
Sbjct: 1248 EH--YWFPMLAGLSDLTSDYRPEVRNCALEVLFDLLNERGNKFSTPFWESIFHRILFPIF 1305
Query: 702 ERVSHLASTS 711
+ VSH S
Sbjct: 1306 DHVSHAGKES 1315
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.318 0.132 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 24,412,330
Number of extensions: 971299
Number of successful extensions: 2766
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 2759
Number of HSP's successfully gapped: 8
Length of query: 1267
Length of database: 11,106,569
Length adjustment: 110
Effective length of query: 1157
Effective length of database: 8,090,809
Effective search space: 9361066013
Effective search space used: 9361066013
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 118 (50.1 bits)