BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0772700 Os01g0772700|Os01g0772700
         (1267 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0772700  Armadillo-like helical domain containing protein   2525   0.0  

>Os01g0772700 Armadillo-like helical domain containing protein
          Length = 1267

 Score = 2525 bits (6544), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1231/1243 (99%), Positives = 1231/1243 (99%)

Query: 1    MAFMAALEADLRALSAEARRRHPSVKDAAEHAILKLRSLSSPMEIAQNEDILRMFLVACS 60
            MAFMAALEADLRALSAEARRRHPSVKDAAEHAILKLRSLSSPMEIAQNEDILRMFLVACS
Sbjct: 1    MAFMAALEADLRALSAEARRRHPSVKDAAEHAILKLRSLSSPMEIAQNEDILRMFLVACS 60

Query: 61   VKSVKLSVIGLSCLQKLISHDAVASSALKDILTTLKDHAEMTDEIVQLKTLQTILIIFQS 120
            VKSVKLSVIGLSCLQKLISHDAVASSALKDILTTLKDHAEMTDEIVQLKTLQTILIIFQS
Sbjct: 61   VKSVKLSVIGLSCLQKLISHDAVASSALKDILTTLKDHAEMTDEIVQLKTLQTILIIFQS 120

Query: 121  HLQPESELPLDQSEASPVIKKAPRLLAIIKQLVTAVNMSQAFDICLHLLESNRSSDSVRK 180
            HLQPESELPLDQSEASPVIKKAPRLLAIIKQLVTAVNMSQAFDICLHLLESNRSSDSVRK
Sbjct: 121  HLQPESELPLDQSEASPVIKKAPRLLAIIKQLVTAVNMSQAFDICLHLLESNRSSDSVRK 180

Query: 181  SLGRNSVEPTVREKLSNVGKLGLRLLEDLTALAAGGSATWLRVYSLHRTFALDILDMNAR 240
            SLGRNSVEPTVREKLSNVGKLGLRLLEDLTALAAGGSATWLRVYSLHRTFALDILDMNAR
Sbjct: 181  SLGRNSVEPTVREKLSNVGKLGLRLLEDLTALAAGGSATWLRVYSLHRTFALDILDMNAR 240

Query: 241  ISKLAVLMPVLELEGEAGEPAFRRLVLRLVAHVIRLYSSSLVTESEASDLSEETLAAVAG 300
            ISKLAVLMPVLELEGEAGEPAFRRLVLRLVAHVIRLYSSSLVTESEASDLSEETLAAVAG
Sbjct: 241  ISKLAVLMPVLELEGEAGEPAFRRLVLRLVAHVIRLYSSSLVTESEASDLSEETLAAVAG 300

Query: 301  MFSSKAKGIEWSMDNDASNAAVLVASEAHTITLALEGLLGVVFTIATLTDEALDVGEACG 360
            MFSSKAKGIEWSMDNDASNAAVLVASEAHTITLALEGLLGVVFTIATLTDEALDVGEACG
Sbjct: 301  MFSSKAKGIEWSMDNDASNAAVLVASEAHTITLALEGLLGVVFTIATLTDEALDVGEACG 360

Query: 361  VLRAIEPLNSFLASLCKFTINNPNEGEKRSIVLSPGSKKVEMLVDQRDSIILTPKNVQAL 420
            VLRAIEPLNSFLASLCKFTINNPNEGEKRSIVLSPGSKKVEMLVDQRDSIILTPKNVQAL
Sbjct: 361  VLRAIEPLNSFLASLCKFTINNPNEGEKRSIVLSPGSKKVEMLVDQRDSIILTPKNVQAL 420

Query: 421  RTLFNVAHRLHNVLGPSWVLVLETLAALDRAIHSPHASTQEVSASVSRLSRDTSGQYSDF 480
            RTLFNVAHRLHNVLGPSWVLVLETLAALDRAIHSPHASTQEVSASVSRLSRDTSGQYSDF
Sbjct: 421  RTLFNVAHRLHNVLGPSWVLVLETLAALDRAIHSPHASTQEVSASVSRLSRDTSGQYSDF 480

Query: 481  HILSSLNSQPFTGVEPIWDQIAAHHLEWVLKNFRASVQLLIIFKRKKAVTDASEKDLISL 540
            HILSSLNSQPFTGVEPIWDQIAAHHLEWVLKNFRASVQLLIIFKRKKAVTDASEKDLISL
Sbjct: 481  HILSSLNSQPFTGVEPIWDQIAAHHLEWVLKNFRASVQLLIIFKRKKAVTDASEKDLISL 540

Query: 541  GFQSIRVIMNEGLATIPVQCLDECILVTGAYGTQKTDINISLTAVGLLWTATDFVVKGLI 600
            GFQSIRVIMNEGLATIPVQCLDECILVTGAYGTQKTDINISLTAVGLLWTATDFVVKGLI
Sbjct: 541  GFQSIRVIMNEGLATIPVQCLDECILVTGAYGTQKTDINISLTAVGLLWTATDFVVKGLI 600

Query: 601  SKSAEKANGMDEEAESGGTVKEEALSSSEKDIKQSPLKSVVDYNKLFFSVFSVLQKLGAD 660
            SKSAEKANGMDEEAESGGTVKEEALSSSEKDIKQSPLKSVVDYNKLFFSVFSVLQKLGAD
Sbjct: 601  SKSAEKANGMDEEAESGGTVKEEALSSSEKDIKQSPLKSVVDYNKLFFSVFSVLQKLGAD 660

Query: 661  DRPEVRNSAVRTLFQTLSTHGQKLSKTMWEDCLWIYVFPMLERVSHLASTSSRDEWQGKE 720
            DRPEVRNSAVRTLFQTLSTHGQKLSKTMWEDCLWIYVFPMLERVSHLASTSSRDEWQGKE
Sbjct: 661  DRPEVRNSAVRTLFQTLSTHGQKLSKTMWEDCLWIYVFPMLERVSHLASTSSRDEWQGKE 720

Query: 721  LGTRAGKAVHMLIHHSRNTAQKQWDETIVLVLGGIARLLRSFFPFLQQLSKFSSGWVLLL 780
            LGTRAGKAVHMLIHHSRNTAQKQWDETIVLVLGGIARLLRSFFPFLQQLSKFSSGWVLLL
Sbjct: 721  LGTRAGKAVHMLIHHSRNTAQKQWDETIVLVLGGIARLLRSFFPFLQQLSKFSSGWVLLL 780

Query: 781  DFVKNGILNGSKEVALAAINCLQTFVGSNCSKGNLESSYVKSVLDIYELVLQTSPNYKND 840
            DFVKNGILNGSKEVALAAINCLQTFVGSNCSKGNLESSYVKSVLDIYELVLQTSPNYKND
Sbjct: 781  DFVKNGILNGSKEVALAAINCLQTFVGSNCSKGNLESSYVKSVLDIYELVLQTSPNYKND 840

Query: 841  SADKVKQEVLRGLGDLYVQAQSLFNDEMYLRLMAVMHLMIKSSMNPTDYDNELGSIPALQ 900
            SADKVKQEVLRGLGDLYVQAQSLFNDEMYLRLMAVMHLMIKSSMNPTDYDNELGSIPALQ
Sbjct: 841  SADKVKQEVLRGLGDLYVQAQSLFNDEMYLRLMAVMHLMIKSSMNPTDYDNELGSIPALQ 900

Query: 901  RGILEIIPMLRPTTMLSSMWSPLLLELLCYLNSHDTPLQKQGKEMHEQKSDAANGATHGF 960
            RGILEIIPMLRPTTMLSSMWSPLLLELLCYLNSHDTPLQKQGKEMHEQKSDAANGATHGF
Sbjct: 901  RGILEIIPMLRPTTMLSSMWSPLLLELLCYLNSHDTPLQKQGKEMHEQKSDAANGATHGF 960

Query: 961  LERSHLNNSSTKMDNAVGCGWGIMFIEKLVPIVVNLFLEAPQNERFNSSPEVIRCLGRCM 1020
            LERSHLNNSSTKMDNAVGCGWGIMFIEKLVPIVVNLFLEAPQNERFNSSPEVIRCLGRCM
Sbjct: 961  LERSHLNNSSTKMDNAVGCGWGIMFIEKLVPIVVNLFLEAPQNERFNSSPEVIRCLGRCM 1020

Query: 1021 NTRRDNPKGTLWRVSAECFNRVLVDEVTHDSADCKSGMSSYKFSRARFWKEVADVYETFL 1080
            NTRRDNPKGTLWRVSAECFNRVLVDEVTHDSADCKSGMSSYKFSRARFWKEVADVYETFL
Sbjct: 1021 NTRRDNPKGTLWRVSAECFNRVLVDEVTHDSADCKSGMSSYKFSRARFWKEVADVYETFL 1080

Query: 1081 VGSCGRXXXXXXXXXXXXTADETLEMAVLTVFGDNVLKLQKDAPVELYIGDKLMCYSIRN 1140
            VGSCGR            TADETLEMAVLTVFGDNVLKLQKDAPVELYIGDKLMCYSIRN
Sbjct: 1081 VGSCGRVLSSDVPSVDSVTADETLEMAVLTVFGDNVLKLQKDAPVELYIGDKLMCYSIRN 1140

Query: 1141 QQREGPLPSVRIDETICVLQELARLIINMETANALSMPLYLKEALEKNESHGRAHLLALL 1200
            QQREGPLPSVRIDETICVLQELARLIINMETANALSMPLYLKEALEKNESHGRAHLLALL
Sbjct: 1141 QQREGPLPSVRIDETICVLQELARLIINMETANALSMPLYLKEALEKNESHGRAHLLALL 1200

Query: 1201 PTFSELVVSSPYQLIEFASSAQSPAVKPRQCRKGANRAGKARI 1243
            PTFSELVVSSPYQLIEFASSAQSPAVKPRQCRKGANRAGKARI
Sbjct: 1201 PTFSELVVSSPYQLIEFASSAQSPAVKPRQCRKGANRAGKARI 1243



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.132    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 37,033,831
Number of extensions: 1417692
Number of successful extensions: 3754
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 3754
Number of HSP's successfully gapped: 1
Length of query: 1267
Length of database: 17,035,801
Length adjustment: 112
Effective length of query: 1155
Effective length of database: 11,187,833
Effective search space: 12921947115
Effective search space used: 12921947115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 162 (67.0 bits)