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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0757800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : UMUC-like DNA-repair protein domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.94 (0.0353) R2 : 0.363
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.3 (0.0921) R2dC : 0.278 R2C : 0.259
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.563 (0.0743) R2dN8 : 0.104 R2N8 : 0.0852
σ : 0.666
deviance : 202.41
__
_____
C
peak time of C : 18.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
177.54 0.626 4.92 -0.432 1.27 -0.604 0.177 0.163 -0.503 18.8 1014 5852 -- --
177.53 0.621 4.92 -0.415 1.28 -0.653 0.11 -- -0.502 18.8 1015 5904 -- --
177.55 0.621 4.92 -0.435 1.27 -0.602 -- 0.145 -0.502 18.8 1015 5877 -- --
177.58 0.621 4.92 -0.403 1.27 -0.661 -- -- -0.502 18.8 1015 5904 -- --
262.67 0.755 4.9 -0.414 -- -0.599 -- 0.261 -0.496 -- 1015 5879 -- --
192.27 0.65 4.95 -0.618 1.29 -- 0.0868 -- -0.633 18.8 -- -- -- --
192.29 0.649 4.95 -0.62 1.29 -- -- -- -0.632 18.8 -- -- -- --
262.61 0.755 4.9 -0.423 -- -0.701 -- -- -0.521 -- 1015 5904 -- --
180.04 0.625 4.91 -- 1.29 -0.931 -- -- -0.427 18.8 1016 5958 -- --
279.18 0.781 4.93 -0.648 -- -- -- -- -0.657 -- -- -- -- --
202.41 0.666 4.94 -- 1.3 -- -- -- -0.563 18.8 -- -- -- --
264.98 0.758 4.88 -- -- -0.96 -- -- -0.455 -- 1016 5958 -- --
290.27 0.795 4.91 -- -- -- -- -- -0.585 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 165.84 temperature 15.0 270 > th dose dependent rect. 2 8
4 167.10 temperature 20.0 270 > th dose independent rect. 3 7
14 170.00 atmosphere 995.0 90 > th dose dependent rect. 17 6
17 170.30 humidity 70.0 90 > th dose independent rect. 17 6
24 171.09 radiation 10.0 90 < th dose independent rect. 8 15
28 171.33 temperature 20.0 270 > th dose independent rect. 4 17
32 171.73 humidity 70.0 90 > th dose independent rect. 15 8
38 172.28 temperature 30.0 90 < th dose independent rect. 17 6
42 172.70 radiation 1.0 270 < th dose dependent rect. 21 19
44 172.77 atmosphere 1000.0 90 > th dose independent rect. 17 6
48 172.91 temperature 15.0 10 > th dose dependent rect. 5 7
58 173.28 humidity 50.0 270 > th dose independent rect. 14 9
60 173.42 radiation 20.0 90 < th dose dependent rect. 8 15
70 173.83 atmosphere 1015.0 90 < th dose independent rect. 23 18
77 173.98 radiation 1.0 270 < th dose independent rect. 21 19
78 173.99 wind 1.0 90 > th dose independent rect. 23 18
79 174.00 wind 1.0 270 > th dose independent rect. 23 16
80 174.00 wind 9.0 90 < th dose independent rect. 23 18
91 174.29 radiation 20.0 90 < th dose dependent rect. 16 7
96 174.35 radiation 40.0 90 < th dose dependent rect. 17 6
98 174.42 temperature 10.0 90 > th dose independent rect. 17 6
99 174.42 radiation 20.0 90 < th dose independent rect. 17 6
102 174.42 temperature 10.0 90 > th dose independent rect. 23 18
103 174.45 atmosphere 995.0 10 > th dose dependent rect. 17 7
109 174.61 precipitation 0.1 90 < th dose independent rect. 23 18
110 174.61 precipitation 0.1 90 < th dose dependent rect. 23 18
116 174.71 humidity 50.0 270 > th dose independent rect. 15 19
118 174.74 wind 1.0 90 > th dose independent rect. 17 6
124 174.79 precipitation 0.1 90 < th dose independent rect. 17 6
125 174.79 precipitation 0.1 90 < th dose dependent rect. 17 6
126 174.82 radiation 40.0 270 < th dose independent rect. 13 10
129 174.87 radiation 10.0 90 < th dose independent rect. 15 8
132 174.97 wind 9.0 90 < th dose independent rect. 17 6
140 175.03 atmosphere 995.0 90 > th dose independent rect. 23 18
174 175.58 atmosphere 1015.0 90 < th dose independent rect. 17 6
175 175.58 atmosphere 1000.0 270 > th dose independent rect. 15 8
177 175.60 humidity 50.0 90 > th dose dependent rect. 17 6
180 175.65 temperature 30.0 270 < th dose independent rect. 15 18
181 175.66 wind 9.0 270 < th dose independent rect. 23 16
189 175.70 temperature 30.0 90 < th dose independent rect. 23 18
192 175.76 temperature 20.0 10 > th dose dependent rect. 5 5
208 175.90 radiation 10.0 90 < th dose independent rect. 11 12
214 175.96 atmosphere 1015.0 270 < th dose independent rect. 23 16
238 176.18 radiation 1.0 90 < th dose dependent rect. 23 17
239 176.19 atmosphere 1000.0 10 > th dose independent rect. 17 7
248 176.27 humidity 90.0 90 < th dose independent rect. 17 6
256 176.33 temperature 10.0 270 > th dose independent rect. 15 8
257 176.33 temperature 10.0 270 > th dose independent rect. 23 16
266 176.41 temperature 10.0 90 > th dose dependent rect. 17 6
276 176.47 atmosphere 995.0 270 > th dose independent rect. 23 15
283 176.53 radiation 10.0 10 < th dose dependent rect. 17 7
296 176.63 radiation 1.0 90 < th dose independent rect. 23 17
299 176.66 humidity 50.0 14400 > th dose independent rect. 13 1
300 176.66 humidity 50.0 90 > th dose independent rect. 23 18
303 176.68 temperature 10.0 90 > th dose dependent rect. 17 18
316 176.77 radiation 10.0 10 < th dose dependent rect. 9 15
318 176.78 wind 9.0 90 < th dose dependent rect. 17 6
320 176.81 humidity 50.0 270 > th dose independent rect. 4 17
324 176.83 radiation 10.0 90 < th dose independent sin 19 NA
328 176.85 temperature 30.0 10 < th dose independent rect. 17 7
329 176.86 radiation 1.0 10 < th dose independent rect. 17 7
330 176.87 temperature 30.0 10 < th dose dependent rect. 24 17
334 176.90 precipitation 0.1 270 < th dose independent rect. 15 8
335 176.90 precipitation 0.1 270 < th dose dependent rect. 15 8
343 176.96 wind 1.0 270 > th dose independent rect. 15 8
352 177.02 precipitation 0.1 270 < th dose independent rect. 23 16
353 177.02 precipitation 0.1 270 < th dose dependent rect. 23 16
364 177.11 wind 1.0 90 > th dose independent rect. 11 6
372 177.14 wind 9.0 90 < th dose independent rect. 11 6
374 177.15 humidity 50.0 14400 < th dose independent rect. 13 1
378 177.19 wind 1.0 270 > th dose independent rect. 11 15
391 177.26 wind 9.0 270 < th dose independent rect. 15 8
394 177.27 radiation 1.0 270 < th dose dependent sin 10 NA
397 177.28 humidity 50.0 14400 > th dose independent rect. 12 5
409 177.33 temperature 25.0 30 > th dose independent rect. 18 5
418 177.36 atmosphere 995.0 90 > th dose independent rect. 17 18
436 177.47 temperature 15.0 90 > th dose independent rect. 17 18
437 177.47 humidity 50.0 14400 > th dose independent rect. 18 23
442 177.50 wind 9.0 270 < th dose independent rect. 11 15
443 177.50 humidity 50.0 270 > th dose independent rect. 5 15
446 177.51 humidity 50.0 14400 > th dose independent rect. 8 9
455 177.52 humidity 50.0 14400 > th dose independent rect. 23 18
473 177.55 temperature 10.0 10 > th dose dependent rect. 5 18
475 177.57 precipitation 0.1 90 < th dose independent rect. 11 6
478 177.57 precipitation 0.1 90 < th dose dependent rect. 11 6
485 177.59 humidity 50.0 14400 > th dose independent rect. 16 23
498 177.62 radiation 1.0 90 < th dose dependent rect. 23 9
505 177.65 temperature 10.0 1440 > th dose independent rect. 18 6
508 177.65 humidity 50.0 1440 > th dose independent rect. 18 6
510 177.65 radiation 20.0 1440 < th dose independent rect. 18 6
522 177.65 temperature 10.0 1440 > th dose independent rect. 24 18
525 177.66 humidity 50.0 14400 > th dose independent sin 0 NA
535 177.69 temperature 10.0 90 > th dose independent rect. 11 6
536 177.69 atmosphere 1015.0 90 < th dose independent rect. 11 6
561 177.71 atmosphere 1010.0 270 < th dose independent rect. 4 6
562 177.71 humidity 50.0 14400 > th dose independent rect. 11 13
563 177.71 humidity 50.0 14400 > th dose independent rect. 11 22
566 177.71 temperature 20.0 10 > th dose dependent rect. 18 18
573 177.73 humidity 50.0 14400 > th dose independent rect. 11 11
580 177.74 humidity 50.0 14400 > th dose independent rect. 11 9
622 177.77 precipitation 0.1 90 < th dose independent rect. 17 18
627 177.77 precipitation 0.1 90 < th dose dependent rect. 17 18
635 177.78 humidity 50.0 14400 > th dose independent rect. 5 19
646 177.79 humidity 50.0 14400 > th dose independent rect. 8 16
655 177.80 humidity 50.0 14400 < th dose independent rect. 12 5
662 177.80 humidity 50.0 14400 > th dose independent rect. 5 16
687 177.81 humidity 50.0 14400 > th dose independent rect. 8 12
715 177.82 humidity 50.0 14400 > th dose independent no NA NA
738 177.82 humidity 50.0 14400 > th dose independent rect. 23 22
742 177.82 humidity 50.0 14400 > th dose independent rect. 21 23
786 177.85 humidity 70.0 30 > th dose independent rect. 5 18
810 177.88 atmosphere 995.0 270 > th dose independent rect. 15 19
813 177.88 humidity 50.0 14400 < th dose independent rect. 16 22
823 177.91 precipitation 0.1 270 < th dose independent rect. 2 9
824 177.91 precipitation 0.1 270 < th dose dependent rect. 2 9
834 177.93 wind 9.0 270 < th dose independent rect. 10 17
857 177.97 humidity 50.0 14400 < th dose independent rect. 12 3
899 178.05 humidity 50.0 14400 < th dose dependent rect. 14 3
900 178.05 humidity 50.0 14400 < th dose dependent rect. 13 21
906 178.08 humidity 50.0 14400 < th dose independent sin 1 NA
915 178.09 humidity 50.0 270 > th dose independent rect. 1 22
918 178.10 humidity 50.0 14400 < th dose independent rect. 9 5
923 178.11 radiation 1.0 90 < th dose independent rect. 23 9
926 178.12 precipitation 0.1 10 < th dose independent rect. 17 7
929 178.12 humidity 60.0 14400 < th dose dependent rect. 12 1
933 178.12 precipitation 0.1 10 < th dose dependent rect. 17 7
948 178.13 wind 1.0 90 > th dose independent rect. 23 7
967 178.17 humidity 50.0 14400 < th dose dependent sin 13 NA