BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0757800 Os01g0757800|AK101271
         (642 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0757800  UMUC-like DNA-repair protein domain containing...  1233   0.0  
Os06g0691000  DNA repair protein, Rev1 family protein              86   8e-17
Os03g0616300  Similar to DNA polymerase kappa (EC 2.7.7.7) (...    80   6e-15

>Os01g0757800 UMUC-like DNA-repair protein domain containing protein
          Length = 642

 Score = 1233 bits (3189), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 601/642 (93%), Positives = 601/642 (93%)

Query: 1   MPVARPEPQEPRVIAHVDMDCFYVQVEQRRNPELRGQPTAVVQYNDWKGGGLIAVSYEAR 60
           MPVARPEPQEPRVIAHVDMDCFYVQVEQRRNPELRGQPTAVVQYNDWKGGGLIAVSYEAR
Sbjct: 1   MPVARPEPQEPRVIAHVDMDCFYVQVEQRRNPELRGQPTAVVQYNDWKGGGLIAVSYEAR 60

Query: 61  KFGVKRSMRGDEAKMVCPSINLVQVPVARDKADLNVYRSAGSEVVTILSTKGKCERASID 120
           KFGVKRSMRGDEAKMVCPSINLVQVPVARDKADLNVYRSAGSEVVTILSTKGKCERASID
Sbjct: 61  KFGVKRSMRGDEAKMVCPSINLVQVPVARDKADLNVYRSAGSEVVTILSTKGKCERASID 120

Query: 121 EVYLDLTDAAKXXXXXXXXXXXXXXXXXATKSNILGLPSDVSNREDSVRAWLCRADADYQ 180
           EVYLDLTDAAK                 ATKSNILGLPSDVSNREDSVRAWLCRADADYQ
Sbjct: 121 EVYLDLTDAAKEMLLESPPELLELIFEEATKSNILGLPSDVSNREDSVRAWLCRADADYQ 180

Query: 181 DKLLSCGAIIVAQLRVKVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSAVQDF 240
           DKLLSCGAIIVAQLRVKVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSAVQDF
Sbjct: 181 DKLLSCGAIIVAQLRVKVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSAVQDF 240

Query: 241 LVSLPIKKMKQLGGKLGSSLQDDLGVNTVGDLLSFTEDKLQEYYGVNTGTWLWKIARGIS 300
           LVSLPIKKMKQLGGKLGSSLQDDLGVNTVGDLLSFTEDKLQEYYGVNTGTWLWKIARGIS
Sbjct: 241 LVSLPIKKMKQLGGKLGSSLQDDLGVNTVGDLLSFTEDKLQEYYGVNTGTWLWKIARGIS 300

Query: 301 GEEVEDRLLPKSHGCGKTFPGPKALKNNASVKTWLDRLCEELSERIQSDLNQNKRIAQTL 360
           GEEVEDRLLPKSHGCGKTFPGPKALKNNASVKTWLDRLCEELSERIQSDLNQNKRIAQTL
Sbjct: 301 GEEVEDRLLPKSHGCGKTFPGPKALKNNASVKTWLDRLCEELSERIQSDLNQNKRIAQTL 360

Query: 361 TLYARACKKNKSDSIKKFPSKSCPLRYGTVKIQEDAMKLFESGLHDFLGSQNTKWSITSL 420
           TLYARACKKNKSDSIKKFPSKSCPLRYGTVKIQEDAMKLFESGLHDFLGSQNTKWSITSL
Sbjct: 361 TLYARACKKNKSDSIKKFPSKSCPLRYGTVKIQEDAMKLFESGLHDFLGSQNTKWSITSL 420

Query: 421 SVSASKIFDIPIGTSSILRYIKGPNSTVSPANLDCSSLPEDPSLGNKLYIAPNHEEHCEP 480
           SVSASKIFDIPIGTSSILRYIKGPNSTVSPANLDCSSLPEDPSLGNKLYIAPNHEEHCEP
Sbjct: 421 SVSASKIFDIPIGTSSILRYIKGPNSTVSPANLDCSSLPEDPSLGNKLYIAPNHEEHCEP 480

Query: 481 SLSEKEDYGNNSNLAKQCQIKEEKKVSKKLTEVKGTCSILKFLSQSPVLSEKRKIDSLIC 540
           SLSEKEDYGNNSNLAKQCQIKEEKKVSKKLTEVKGTCSILKFLSQSPVLSEKRKIDSLIC
Sbjct: 481 SLSEKEDYGNNSNLAKQCQIKEEKKVSKKLTEVKGTCSILKFLSQSPVLSEKRKIDSLIC 540

Query: 541 SHPGPESSSEPNKAEEHKAAQYVDRNKFXXXXXXXXXXXXWMFNVEDIDPAVVEELPPEI 600
           SHPGPESSSEPNKAEEHKAAQYVDRNKF            WMFNVEDIDPAVVEELPPEI
Sbjct: 541 SHPGPESSSEPNKAEEHKAAQYVDRNKFNTAGSNSASSSTWMFNVEDIDPAVVEELPPEI 600

Query: 601 QREIHGWIRPPKQXXXXXXXXXXXXYFQPAKSYSLQAIPILL 642
           QREIHGWIRPPKQ            YFQPAKSYSLQAIPILL
Sbjct: 601 QREIHGWIRPPKQSSSKTRGSTISSYFQPAKSYSLQAIPILL 642



>Os06g0691000 DNA repair protein, Rev1 family protein
          Length = 1125

 Score = 85.9 bits (211), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 94/375 (25%), Positives = 145/375 (38%), Gaps = 73/375 (19%)

Query: 13  VIAHVDMDCFYVQVEQRRNPELRGQPTAVVQYNDWKGGGLI-AVSYEARKFGVKRSMRGD 71
            I H+DMDCF+V V  R  PEL  +P AV   ++ KG   I + +Y AR +G+K  M   
Sbjct: 378 TIIHIDMDCFFVSVVIRNKPELHDKPVAVCHSDNPKGTAEISSANYPARNYGIKAGMFVR 437

Query: 72  EAKMVCPSINLVQVPVARDKADLNVYRSAGSEVVTILSTK-GKCERASIDEVYLDLTDAA 130
           EAK  CP  +L+ VP      D + Y     +   IL     K +  S DE +LD+T+  
Sbjct: 438 EAKARCP--HLMIVPY-----DFDAYGEVADQFYGILHKYCSKVQALSCDEAFLDMTECL 490

Query: 131 KXXXXXXXXXXXXXXXXXATKSNILGLPSDVSN--REDSVRAWLCRADADYQDKLLSCGA 188
                                      P +V+   R +      C A A         G 
Sbjct: 491 HDN------------------------PEEVTQKIRNEIFGTTKCSASAGIS------GN 520

Query: 189 IIVAQLRVKVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSAVQDFLVSLPIKK 248
           +++A+L  +                           KP  Q  + S  V  +L +L IK 
Sbjct: 521 MLIARLATRSA-------------------------KPNGQCFISSEKVDGYLNTLSIKA 555

Query: 249 MKQLGGKLGSSLQDDLGVNTVGDLLSFTEDKLQEYYGVNTGTWLWKIARGISGEEVEDRL 308
           +  +G  +   L+    V   G L +  ++ L + +G   G  LW   RGI    VE   
Sbjct: 556 LPGIGHTVSDKLKSK-EVEYCGQLRNIPKESLHKDFGKKIGDMLWNYCRGIDHSVVEAVQ 614

Query: 309 LPKSHGCGKTFPGPKALKNNASVKTWLDRLCEELSERIQSDLNQNKRIAQTLTLYARACK 368
             KS G    + G +   +N   + +L  L +E+  R++    Q +    T+TL  +  +
Sbjct: 615 ETKSVGAEVNW-GVR-FNDNKDAENFLVNLSKEVCLRLEGCGVQGR----TITLKLKTRR 668

Query: 369 KNKSDSIKKFPSKSC 383
           K   + IK      C
Sbjct: 669 KGAGEPIKFMGCGDC 683



>Os03g0616300 Similar to DNA polymerase kappa (EC 2.7.7.7) (DINB protein) (DINP).
           Splice isoform 4
          Length = 617

 Score = 79.7 bits (195), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 55/181 (30%), Positives = 98/181 (54%), Gaps = 16/181 (8%)

Query: 187 GAIIVAQLRVKVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSS--AVQDFLVSL 244
           G  +  +LR  + +ET  TCSAG+A N+M+AK+ S ++KP  Q ++P+   AV  F+ +L
Sbjct: 170 GEEVATELRGAIHQETGLTCSAGVAPNRMIAKVCSDINKPNGQFILPNDQEAVTTFVSTL 229

Query: 245 PIKKMKQLGGKLGSSLQDDLGVNTVGDLL---SFTEDKLQEYYGVNTGTWLWKIARGISG 301
           PI+K+  +G      L+  LG++T  ++L   SF    L   +  ++  +   +  G+ G
Sbjct: 230 PIRKIGGIGKVTEQMLRQVLGISTCQEMLQKASF----LCALFSESSADFFISVGLGLGG 285

Query: 302 EEVEDRLLPKSHGCGKTFPGPKALKNNASVKTWLDRLCEELSERIQSDLNQNKRIAQTLT 361
            E  ++ L KS  C +TF   +A  + + +   LD L + L++ +Q +  + +    TLT
Sbjct: 286 TETPEQRLRKSISCERTF---RATDDCSMLFEKLDSLADNLADDMQKECLKGR----TLT 338

Query: 362 L 362
           L
Sbjct: 339 L 339



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.131    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 20,843,878
Number of extensions: 838018
Number of successful extensions: 1360
Number of sequences better than 1.0e-10: 3
Number of HSP's gapped: 1360
Number of HSP's successfully gapped: 3
Length of query: 642
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 535
Effective length of database: 11,448,903
Effective search space: 6125163105
Effective search space used: 6125163105
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 159 (65.9 bits)