BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0757800 Os01g0757800|AK101271
(642 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G44740.2 | chr5:18047903-18051779 REVERSE LENGTH=673 666 0.0
AT1G49980.1 | chr1:18508026-18512111 FORWARD LENGTH=672 115 1e-25
AT5G44750.2 | chr5:18052669-18059581 FORWARD LENGTH=1106 110 2e-24
>AT5G44740.2 | chr5:18047903-18051779 REVERSE LENGTH=673
Length = 672
Score = 666 bits (1719), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/667 (54%), Positives = 444/667 (66%), Gaps = 73/667 (10%)
Query: 1 MPVARPEPQEPRVIAHVDMDCFYVQVEQRRNPELRGQPTAVVQYNDWKGGGLIAVSYEAR 60
MPVARPE + RVIAHVDMDCFYVQVEQR+ PELRG P+AVVQYN+W+GGGLIAVSYEAR
Sbjct: 1 MPVARPEASDARVIAHVDMDCFYVQVEQRKQPELRGLPSAVVQYNEWQGGGLIAVSYEAR 60
Query: 61 KFGVKRSMRGDEAKMVCPSINLVQVPVARDKADLNVYRSAGSEVVTILSTKGKCERASID 120
K GVKRSMRGDEAK CP I LVQVPVAR KADLN+YRSAGSEVV+IL+ GKCERASID
Sbjct: 61 KCGVKRSMRGDEAKAACPQIQLVQVPVARGKADLNLYRSAGSEVVSILAKSGKCERASID 120
Query: 121 EVYLDLTDAAKXXXXXXXXXXXXXXXXXATKSNILGLPSDVSNRED------SVRAWLCR 174
EVYLDLTDAA+ KS+ILG+ NRED SVR W+CR
Sbjct: 121 EVYLDLTDAAESMLADAPPESLELIDEEVLKSHILGM-----NREDGDDFKESVRNWICR 175
Query: 175 ADADYQDKLLSCGAIIVAQLRVKVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPS 234
DAD +DKLLSCG IIVA+LR +VL+ET+FTCSAGIAHNKMLAKL SGM+KPAQQTVVP
Sbjct: 176 EDADRRDKLLSCGIIIVAELRKQVLKETEFTCSAGIAHNKMLAKLASGMNKPAQQTVVPY 235
Query: 235 SAVQDFLVSLPIKKMKQLGGKLGSSLQDDLGVNTVGDLLSFTEDKLQEYYGVNTGTWLWK 294
+AVQ+ L SLPIKKMKQLGGKLG+SLQ DLGV+TVGDLL F+E KLQE+YGVNTGTWLW
Sbjct: 236 AAVQELLSSLPIKKMKQLGGKLGTSLQTDLGVDTVGDLLQFSETKLQEHYGVNTGTWLWN 295
Query: 295 IARGISGEEVEDRLLPKSHGCGKTFPGPKALKNNASVKTWLDRLCEELSERIQSDLNQNK 354
IARGISGEEV+ RLLPKSHG GKTFPGP+ALK+ ++V+ WL++L EELSER+ SDL QNK
Sbjct: 296 IARGISGEEVQGRLLPKSHGSGKTFPGPRALKSLSTVQHWLNQLSEELSERLGSDLEQNK 355
Query: 355 RIAQTLTLYARACKKNKSDSIKKFPSKSCPLRYGTVKIQEDAMKLFESGLHDFLGSQNTK 414
RIA TLTL+A A + SDS KKFPSKSCP+RYG KIQEDA LF++ L +++GS K
Sbjct: 356 RIASTLTLHASAFRSKDSDSHKKFPSKSCPMRYGVTKIQEDAFNLFQAALREYMGSFGIK 415
Query: 415 --------WSITSLSVSASKIFDIPIGTSSILRY---------------IKGPNSTVSPA 451
W IT LSVSASKI DIP GTSSI+RY ++G + + A
Sbjct: 416 PQGNKLETWRITGLSVSASKIVDIPSGTSSIMRYFQSQPTVPSRSADGCVQGNVAMTASA 475
Query: 452 NLDCS---------SLPEDPSLGNKLYIAPNHEEHCEPS--LSEKEDYGNNSNLAKQCQI 500
+ CS ++PE + Y PN E + +SEK+ SN A
Sbjct: 476 SEGCSEQRSTETQAAMPEVDT--GVTYTLPNFENQDKDIDLVSEKDVVSCPSNEATDVST 533
Query: 501 KEE-------KKVSKKLTEVK-------GTCSILKFLSQSPVLSEKRKIDSLICSHPGPE 546
+ E KK+ +K+ K I K + +P ++ + DS + S +
Sbjct: 534 QSESNKGTQTKKIGRKMNNSKEKNRGMPSIVDIFKNYNATPPSKQETQEDSTVSS--ASK 591
Query: 547 SSSEPNKAEEHKAAQYVDRNKFXXXXXXXXXXXXWMFNVEDIDPAVVEELPPEIQREIHG 606
+ + + + Q V+ ++ W + ++ID +V +ELP EIQRE+
Sbjct: 592 RAKLSSSSHNSQVNQEVEESR----------ETDWGYKTDEIDQSVFDELPVEIQRELRS 641
Query: 607 WIRPPKQ 613
++R KQ
Sbjct: 642 FLRTNKQ 648
>AT1G49980.1 | chr1:18508026-18512111 FORWARD LENGTH=672
Length = 671
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 106/362 (29%), Positives = 160/362 (44%), Gaps = 89/362 (24%)
Query: 12 RVIAHVDMDCFYVQVEQRRNPELRGQPTAVVQYNDWKGGGLIAVS---YEARKFGVKRSM 68
R+ HVDMD FY VE +P ++G+P AV GGL +S YEARKFGV+ +M
Sbjct: 103 RIWLHVDMDAFYAAVETLSDPSIKGKPMAV--------GGLSMISTANYEARKFGVRAAM 154
Query: 69 RGDEAKMVCPSINLVQVPVARDK----ADLN--VYRSAGSEVVTILSTKGKCERASIDEV 122
G A+ +CP +L+ VPV K +DL V+R+ + S+DE
Sbjct: 155 PGFIARKLCP--DLIFVPVDFTKYTHYSDLTRKVFRNYDPHFIA----------GSLDEA 202
Query: 123 YLDLTDAAKXXXXXXXXXXXXXXXXXATKSNILGLPSDVSNREDSVRAWLCRADADYQDK 182
YLD+T+ +CR ++
Sbjct: 203 YLDITE-------------------------------------------VCR------ER 213
Query: 183 LLSCGAIIVAQLRVKVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPS--SAVQDF 240
LS G I +LR V ET TCSAG+A N++LAK+ S ++KP Q V+ + S V F
Sbjct: 214 GLS-GGEIAEELRSSVYSETGLTCSAGVAANRLLAKVCSDINKPNGQFVLQNDRSTVMTF 272
Query: 241 LVSLPIKKMKQLGGKLGSSLQDDLGVNTVGDLLSFTEDKLQEYYGVNTGTWLWKIARGIS 300
+ LP++K+ +G L+D LG+ T +++ L + ++ + + G+
Sbjct: 273 VSFLPVRKIGGIGKVTEHILKDALGIKTCEEMVQ-KGSLLYALFSQSSADFFLSVGLGLG 331
Query: 301 GEEVEDRLLPKSHGCGKTFPGPKALKNNASVKTWLDRLCEELSERIQSDLNQNKRIAQTL 360
G KS +TF A + + + LD L E LS D+ + A+TL
Sbjct: 332 GTNTPQVRSRKSISSERTFA---ATGDERLLYSKLDELAEMLSH----DMKKEGLTARTL 384
Query: 361 TL 362
TL
Sbjct: 385 TL 386
>AT5G44750.2 | chr5:18052669-18059581 FORWARD LENGTH=1106
Length = 1105
Score = 110 bits (276), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 102/377 (27%), Positives = 157/377 (41%), Gaps = 73/377 (19%)
Query: 13 VIAHVDMDCFYVQVEQRRNPELRGQPTAVVQYNDWKGGGLIA-VSYEARKFGVKRSMRGD 71
I H+D+DCF+V V + EL +P AV ++ KG I+ +Y AR +GVK M
Sbjct: 374 TIIHIDLDCFFVSVVIKNRLELHDKPVAVCHSDNPKGTAEISSANYPARAYGVKAGMFVR 433
Query: 72 EAKMVCPSINLVQVPVARDKADLNVYRSAGSEVVTILSTK-GKCERASIDEVYLDLTDAA 130
AK +CP LV VP + Y + IL K + S DE +LD++D
Sbjct: 434 HAKDLCP--QLVIVPY-----NFEAYEEVADQFYDILHRHCRKVQALSCDEAFLDVSDL- 485
Query: 131 KXXXXXXXXXXXXXXXXXATKSNILGLPSDVSNREDSVRAWLCRADADYQDKLLSCGAII 190
SDV ++
Sbjct: 486 ----------------------------SDVETE------------------------VL 493
Query: 191 VAQLRVKVLEETQFTCSAGIAHNKMLAKLVSGMHKPAQQTVVPSSAVQDFLVSLPIKKMK 250
+ +R ++LE T + SAGI ++A+L + + KPA Q + + V++FL LP+ +
Sbjct: 494 ASTIRNEILETTGCSASAGIGGTMLMARLATRVAKPAGQLYISAEKVEEFLDQLPVGTLP 553
Query: 251 QLGGKLGSSLQDDLGVNTVGDLLSFTEDKLQEYYGVNTGTWLWKIARGISGEEVEDRLLP 310
+G L L + T G L ++D LQ+ +GV TG LW +RG+ V
Sbjct: 554 GVGSVLKEKLVKQ-NIQTCGQLRLISKDSLQKDFGVKTGEMLWSYSRGLDLRSVTAVQES 612
Query: 311 KSHGC----GKTFPGPKALKNNASVKTWLDRLCEELSERIQSDLNQNKRIAQTLTLYARA 366
KS G G F + + V+ +L LC+E+S R+Q + I +T TL +
Sbjct: 613 KSIGAEVNWGVRFRDQQDV--FILVQHFLQCLCKEVSLRLQG----CEMIGRTFTLKIKK 666
Query: 367 CKKNKSDSIKKFPSKSC 383
KK+ + K C
Sbjct: 667 RKKDAEEPTKYMGCGDC 683
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.131 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,530,968
Number of extensions: 561912
Number of successful extensions: 1164
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1155
Number of HSP's successfully gapped: 5
Length of query: 642
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 537
Effective length of database: 8,227,889
Effective search space: 4418376393
Effective search space used: 4418376393
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 115 (48.9 bits)