Os01g0752800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to HASP protein-like protein (Fragment).
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Os01g0752800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to HASP protein-like protein (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.09 | 0.216 | 13.3 | -1.56 | 0.362 | 0.854 | -0.39 | -1.87 | -0.439 | 15.4 | 19.46 | 2011 | -- | -- |
| 22.29 | 0.22 | 13.2 | -1.22 | 0.412 | 0.985 | -0.345 | -- | -0.316 | 16 | 12.09 | 5086 | -- | -- |
| 21.5 | 0.216 | 13.3 | -1.59 | 0.345 | 0.845 | -- | -1.97 | -0.449 | 15.7 | 19.99 | 1855 | -- | -- |
| 22.72 | 0.222 | 13.2 | -1.23 | 0.404 | 0.999 | -- | -- | -0.323 | 15.9 | 11.95 | 5087 | -- | -- |
| 28.02 | 0.247 | 13.3 | -1.64 | -- | 0.868 | -- | -2.09 | -0.468 | -- | 20.6 | 1839 | -- | -- |
| 39.16 | 0.293 | 13.2 | -0.754 | 0.39 | -- | -0.42 | -- | -0.122 | 16.4 | -- | -- | -- | -- |
| 39.65 | 0.295 | 13.2 | -0.758 | 0.387 | -- | -- | -- | -0.124 | 16.4 | -- | -- | -- | -- |
| 28.21 | 0.247 | 13.2 | -1 | -- | 1.11 | -- | -- | -0.288 | -- | 15.18 | 251 | -- | -- |
| 49.67 | 0.328 | 13.2 | -- | 0.479 | 0.414 | -- | -- | -0.11 | 16.3 | 18.84 | 1271 | -- | -- |
| 47.7 | 0.323 | 13.2 | -0.773 | -- | -- | -- | -- | -0.135 | -- | -- | -- | -- | -- |
| 54.77 | 0.346 | 13.1 | -- | 0.401 | -- | -- | -- | -0.0401 | 16.3 | -- | -- | -- | -- |
| 52.19 | 0.336 | 13.2 | -- | -- | 0.652 | -- | -- | -0.139 | -- | 20.36 | 251 | -- | -- |
| 63.45 | 0.372 | 13.1 | -- | -- | -- | -- | -- | -0.049 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.02 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 5 |
| 2 | 21.02 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 7 |
| 4 | 21.02 | temperature | 20 | 1440 | > th | dose dependent | rect. | 14 | 17 |
| 8 | 21.05 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 11 |
| 10 | 21.06 | temperature | 20 | 1440 | > th | dose dependent | sin | 15 | NA |
| 39 | 21.14 | temperature | 30 | 4320 | < th | dose dependent | rect. | 14 | 17 |
| 55 | 21.19 | temperature | 25 | 4320 | < th | dose dependent | rect. | 6 | 1 |
| 63 | 21.20 | radiation | 1 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 115 | 21.26 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 13 |
| 117 | 21.26 | temperature | 15 | 4320 | > th | dose dependent | rect. | 5 | 2 |
| 127 | 21.27 | temperature | 30 | 4320 | < th | dose dependent | sin | 14 | NA |
| 157 | 21.29 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 14 |
| 165 | 21.30 | radiation | 1 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 175 | 21.30 | radiation | 1 | 14400 | < th | dose independent | rect. | 8 | 11 |
| 185 | 21.30 | temperature | 10 | 4320 | > th | dose dependent | sin | 13 | NA |
| 214 | 21.32 | temperature | 20 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 216 | 21.32 | temperature | 20 | 4320 | > th | dose dependent | rect. | 14 | 5 |
| 242 | 21.34 | radiation | 1 | 14400 | < th | dose independent | rect. | 17 | 14 |
| 250 | 21.34 | temperature | 20 | 4320 | > th | dose dependent | rect. | 15 | 3 |
| 270 | 21.35 | radiation | 1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 273 | 21.35 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 11 |
| 287 | 21.36 | temperature | 15 | 4320 | > th | dose dependent | rect. | 2 | 5 |
| 288 | 21.36 | temperature | 15 | 4320 | > th | dose dependent | rect. | 23 | 8 |
| 292 | 21.36 | temperature | 25 | 4320 | < th | dose dependent | rect. | 20 | 11 |
| 305 | 21.37 | radiation | 1 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 395 | 21.40 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 8 |
| 416 | 21.41 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 494 | 21.43 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 3 |
| 497 | 21.43 | temperature | 30 | 4320 | < th | dose dependent | rect. | 2 | 5 |
| 539 | 21.44 | radiation | 1 | 14400 | < th | dose dependent | rect. | 16 | 14 |
| 552 | 21.45 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 555 | 21.45 | temperature | 30 | 4320 | < th | dose dependent | no | NA | NA |
| 568 | 21.45 | radiation | 1 | 14400 | < th | dose dependent | rect. | 21 | 9 |
| 591 | 21.45 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 23 |
| 592 | 21.45 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 23 |
| 593 | 21.46 | radiation | 1 | 14400 | < th | dose independent | sin | 18 | NA |
| 655 | 21.46 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 661 | 21.46 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 23 |
| 677 | 21.47 | temperature | 15 | 4320 | > th | dose dependent | rect. | 23 | 5 |
| 720 | 21.48 | radiation | 1 | 14400 | > th | dose independent | rect. | 8 | 11 |
| 778 | 21.48 | temperature | 30 | 4320 | < th | dose dependent | rect. | 5 | 23 |
| 832 | 21.49 | temperature | 15 | 4320 | > th | dose dependent | rect. | 21 | 22 |
| 846 | 21.50 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 4 |
| 900 | 21.51 | temperature | 20 | 4320 | > th | dose dependent | sin | 20 | NA |
| 902 | 21.51 | temperature | 15 | 4320 | > th | dose dependent | rect. | 2 | 1 |
| 923 | 21.51 | temperature | 15 | 4320 | > th | dose dependent | rect. | 23 | 20 |