BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0752800 Os01g0752800|AK103612
         (166 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0752800  Similar to HASP protein-like protein (Fragment)     226   4e-60
Os05g0515900  Similar to 28 kDa heat- and acid-stable phosph...    87   5e-18

>Os01g0752800 Similar to HASP protein-like protein (Fragment)
          Length = 166

 Score =  226 bits (577), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 118/142 (83%), Positives = 118/142 (83%)

Query: 1   MGRGKFKGKPTGRRNFSTPEEIAAGTSGRPRTFKKNLAXXXXXXXXXXXXXXXXXXXXXX 60
           MGRGKFKGKPTGRRNFSTPEEIAAGTSGRPRTFKKNLA                      
Sbjct: 1   MGRGKFKGKPTGRRNFSTPEEIAAGTSGRPRTFKKNLAEEEKEEEEDDIEESEEEESEDE 60

Query: 61  XXGKAKHKGTEGLIQIENPNLVKAKNIKAKEVDLGKTTELSRREREEIEKQKAHERYMKL 120
             GKAKHKGTEGLIQIENPNLVKAKNIKAKEVDLGKTTELSRREREEIEKQKAHERYMKL
Sbjct: 61  SEGKAKHKGTEGLIQIENPNLVKAKNIKAKEVDLGKTTELSRREREEIEKQKAHERYMKL 120

Query: 121 QEQGKTEQARKDLERLALIRQQ 142
           QEQGKTEQARKDLERLALIRQQ
Sbjct: 121 QEQGKTEQARKDLERLALIRQQ 142



>Os05g0515900 Similar to 28 kDa heat- and acid-stable phosphoprotein
           (PDGF-associated protein) (PAP) (PDGFA-associated
           protein 1) (PAP1)
          Length = 94

 Score = 87.4 bits (215), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 42/51 (82%), Positives = 49/51 (96%)

Query: 92  VDLGKTTELSRREREEIEKQKAHERYMKLQEQGKTEQARKDLERLALIRQQ 142
           V +G+T++LSRREREE+EKQK+HER+MKLQEQGKTEQARKDLERL LIRQQ
Sbjct: 20  VQIGRTSDLSRREREELEKQKSHERHMKLQEQGKTEQARKDLERLTLIRQQ 70



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.310    0.129    0.346 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,724,757
Number of extensions: 113940
Number of successful extensions: 607
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 606
Number of HSP's successfully gapped: 2
Length of query: 166
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 73
Effective length of database: 12,179,899
Effective search space: 889132627
Effective search space used: 889132627
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 152 (63.2 bits)