BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0752800 Os01g0752800|AK103612
         (166 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G46020.1  | chr5:18663075-18664629 REVERSE LENGTH=165          153   4e-38

>AT5G46020.1 | chr5:18663075-18664629 REVERSE LENGTH=165
          Length = 164

 Score =  153 bits (387), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 83/143 (58%), Positives = 100/143 (69%), Gaps = 4/143 (2%)

Query: 1   MGRGKFKGKPTGRRNFSTPEEIAAGTSG-RPRTFKKNLAXXXXXXXXXXXXXXXXXXXXX 59
           MGRGKFKGKPTG+R FS+  +I AGTS  RPR+FK+  A                     
Sbjct: 1   MGRGKFKGKPTGQRRFSSAADILAGTSAARPRSFKQKEAEYEEDVEEESEEESEEESEDE 60

Query: 60  XXXGKAKHKGTEGLIQIENPNLVKAKNIKAKEVDLGKTTELSRREREEIEKQKAHERYMK 119
                 K KG E +I+++NPN V+ K +KAK++D  KTTELSRREREE+EKQ+AHERYM+
Sbjct: 61  A---DVKKKGAEAVIEVDNPNRVRQKTLKAKDLDASKTTELSRREREELEKQRAHERYMR 117

Query: 120 LQEQGKTEQARKDLERLALIRQQ 142
           LQEQGKTEQARKDL+RLALIRQQ
Sbjct: 118 LQEQGKTEQARKDLDRLALIRQQ 140



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.310    0.129    0.346 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,420,538
Number of extensions: 76069
Number of successful extensions: 554
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 555
Number of HSP's successfully gapped: 1
Length of query: 166
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 75
Effective length of database: 8,611,713
Effective search space: 645878475
Effective search space used: 645878475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 108 (46.2 bits)