Os01g0744400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os01g0744400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.74 | 0.256 | 8.36 | -0.59 | 0.584 | -25.8 | -0.0762 | -52 | 0.191 | 1.19 | 14.69 | 1509 | -- | -- |
| 30.38 | 0.259 | 8.55 | -0.126 | 0.587 | -1.21 | -0.0911 | -- | 0.204 | 1.25 | 14.81 | 140 | -- | -- |
| 29.77 | 0.254 | 8.36 | -0.582 | 0.583 | -25.9 | -- | -52.1 | 0.192 | 1.18 | 14.69 | 1501 | -- | -- |
| 29.95 | 0.255 | 8.55 | -0.194 | 0.583 | -1.24 | -- | -- | 0.19 | 1.16 | 14.86 | 1661 | -- | -- |
| 50.25 | 0.33 | 8.25 | -0.756 | -- | -25.8 | -- | -52.5 | 0.203 | -- | 15.27 | 1326 | -- | -- |
| 33.15 | 0.27 | 8.55 | -0.0748 | 0.567 | -- | 0.0519 | -- | 0.217 | 1.28 | -- | -- | -- | -- |
| 33.16 | 0.27 | 8.55 | -0.0766 | 0.567 | -- | -- | -- | 0.217 | 1.28 | -- | -- | -- | -- |
| 49.55 | 0.328 | 8.55 | -0.21 | -- | -0.701 | -- | -- | 0.165 | -- | 20.07 | 1080 | -- | -- |
| 30.52 | 0.257 | 8.55 | -- | 0.579 | -1.14 | -- | -- | 0.212 | 1.21 | 14.64 | 1781 | -- | -- |
| 53.01 | 0.34 | 8.54 | -0.0545 | -- | -- | -- | -- | 0.228 | -- | -- | -- | -- | -- |
| 33.32 | 0.27 | 8.54 | -- | 0.566 | -- | -- | -- | 0.225 | 1.28 | -- | -- | -- | -- |
| 48.52 | 0.325 | 8.52 | -- | -- | 0.544 | -- | -- | 0.296 | -- | 47.81 | 999 | -- | -- |
| 53.09 | 0.34 | 8.54 | -- | -- | -- | -- | -- | 0.234 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.33 | temperature | 25 | 270 | < th | dose independent | rect. | 24 | 9 |
| 3 | 28.53 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 4 | 28.64 | temperature | 15 | 1440 | > th | dose independent | rect. | 4 | 16 |
| 7 | 28.72 | temperature | 15 | 1440 | > th | dose independent | rect. | 4 | 18 |
| 9 | 28.74 | temperature | 25 | 270 | > th | dose dependent | rect. | 6 | 5 |
| 18 | 28.82 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 10 |
| 21 | 28.83 | humidity | 90 | 90 | > th | dose dependent | rect. | 24 | 10 |
| 64 | 29.05 | temperature | 15 | 1440 | > th | dose independent | rect. | 15 | 7 |
| 75 | 29.08 | temperature | 25 | 270 | > th | dose independent | rect. | 4 | 6 |
| 76 | 29.08 | temperature | 15 | 1440 | > th | dose independent | rect. | 13 | 9 |
| 79 | 29.10 | temperature | 15 | 1440 | > th | dose independent | rect. | 15 | 5 |
| 83 | 29.11 | humidity | 90 | 90 | > th | dose independent | rect. | 1 | 9 |
| 85 | 29.13 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 3 |
| 86 | 29.13 | temperature | 15 | 1440 | > th | dose independent | rect. | 15 | 9 |
| 93 | 29.14 | temperature | 15 | 4320 | < th | dose dependent | rect. | 1 | 3 |
| 95 | 29.14 | temperature | 15 | 4320 | < th | dose dependent | rect. | 1 | 10 |
| 104 | 29.15 | temperature | 15 | 1440 | > th | dose independent | rect. | 20 | 5 |
| 105 | 29.15 | temperature | 15 | 4320 | < th | dose dependent | rect. | 2 | 1 |
| 109 | 29.16 | temperature | 15 | 1440 | > th | dose independent | rect. | 13 | 11 |
| 124 | 29.19 | temperature | 20 | 270 | < th | dose dependent | rect. | 13 | 10 |
| 126 | 29.20 | radiation | 1 | 1440 | > th | dose independent | rect. | 10 | 3 |
| 131 | 29.21 | temperature | 15 | 1440 | > th | dose independent | rect. | 13 | 7 |
| 145 | 29.24 | humidity | 90 | 90 | > th | dose independent | rect. | 3 | 7 |
| 146 | 29.24 | temperature | 20 | 270 | < th | dose dependent | rect. | 17 | 6 |
| 173 | 29.28 | temperature | 20 | 270 | < th | dose dependent | rect. | 18 | 4 |
| 177 | 29.29 | humidity | 70 | 720 | > th | dose independent | rect. | 19 | 8 |
| 198 | 29.32 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 3 |
| 209 | 29.33 | temperature | 15 | 4320 | < th | dose dependent | sin | 4 | NA |
| 211 | 29.33 | temperature | 25 | 720 | < th | dose dependent | rect. | 12 | 1 |
| 213 | 29.33 | humidity | 90 | 90 | > th | dose dependent | rect. | 3 | 7 |
| 240 | 29.36 | temperature | 15 | 1440 | > th | dose independent | rect. | 4 | 6 |
| 242 | 29.36 | temperature | 20 | 270 | < th | dose dependent | sin | 16 | NA |
| 255 | 29.37 | humidity | 60 | 720 | < th | dose independent | rect. | 18 | 15 |
| 264 | 29.37 | humidity | 60 | 720 | < th | dose dependent | rect. | 18 | 15 |
| 269 | 29.38 | temperature | 25 | 720 | < th | dose dependent | rect. | 12 | 3 |
| 319 | 29.41 | temperature | 20 | 10 | < th | dose dependent | rect. | 15 | 11 |
| 327 | 29.42 | humidity | 90 | 90 | > th | dose dependent | sin | 3 | NA |
| 331 | 29.43 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 6 |
| 370 | 29.45 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 6 | 8 |
| 371 | 29.45 | temperature | 20 | 10 | < th | dose dependent | rect. | 15 | 9 |
| 474 | 29.51 | temperature | 25 | 90 | > th | dose dependent | sin | 6 | NA |
| 508 | 29.53 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 2 |
| 514 | 29.53 | radiation | 1 | 720 | < th | dose dependent | rect. | 13 | 2 |
| 525 | 29.54 | temperature | 15 | 1440 | > th | dose independent | rect. | 18 | 2 |
| 584 | 29.59 | humidity | 70 | 14400 | > th | dose independent | rect. | 21 | 7 |
| 596 | 29.60 | temperature | 20 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 618 | 29.61 | temperature | 15 | 1440 | > th | dose independent | rect. | 18 | 6 |
| 621 | 29.61 | temperature | 15 | 270 | > th | dose independent | rect. | 10 | 23 |
| 637 | 29.63 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 4 |
| 643 | 29.63 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 4 |
| 648 | 29.63 | temperature | 20 | 10 | < th | dose dependent | rect. | 18 | 8 |
| 698 | 29.65 | temperature | 30 | 90 | < th | dose dependent | rect. | 15 | 12 |
| 706 | 29.66 | radiation | 40 | 10 | < th | dose independent | rect. | 3 | 18 |
| 728 | 29.67 | temperature | 15 | 1440 | > th | dose independent | rect. | 4 | 3 |
| 735 | 29.67 | temperature | 15 | 1440 | > th | dose independent | rect. | 12 | 14 |
| 756 | 29.68 | temperature | 15 | 30 | > th | dose independent | rect. | 5 | 23 |
| 767 | 29.68 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 10 |
| 773 | 29.69 | temperature | 15 | 1440 | > th | dose independent | rect. | 12 | 3 |
| 774 | 29.69 | temperature | 15 | 1440 | > th | dose independent | rect. | 18 | 4 |
| 862 | 29.72 | temperature | 20 | 30 | > th | dose independent | rect. | 14 | 16 |
| 898 | 29.73 | temperature | 25 | 270 | > th | dose independent | sin | 7 | NA |
| 905 | 29.73 | temperature | 15 | 1440 | > th | dose independent | rect. | 4 | 13 |
| 906 | 29.73 | temperature | 15 | 30 | > th | dose independent | rect. | 19 | 23 |
| 930 | 29.74 | atmosphere | 1015 | 270 | < th | dose dependent | rect. | 9 | 1 |
| 942 | 29.74 | temperature | 15 | 4320 | < th | dose dependent | rect. | 4 | 7 |
| 958 | 29.74 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 3 | 16 |
| 960 | 29.75 | temperature | 15 | 1440 | < th | dose independent | sin | 19 | NA |
| 962 | 29.75 | humidity | 90 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 990 | 29.76 | temperature | 15 | 1440 | < th | dose independent | sin | 1 | NA |
| 996 | 29.76 | temperature | 15 | 1440 | < th | dose dependent | sin | 19 | NA |